WormBase Tree Display for Variation: WBVar00045541
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| WBVar00045541 | Name | Public_name | WBVar00045541 | ||
|---|---|---|---|---|---|
| Other_name | pas20705 | ||||
| snp_K01A11[4] | |||||
| haw42414 | |||||
| haw142837 | |||||
| cewivar00023189 | |||||
| K01A11.4b.1:c.515-8C>A | |||||
| K01A11.4a.1:c.944-8C>A | |||||
| HGVSg | CHROMOSOME_III:g.3442276G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | K01A11 | |
| Flanking_sequences | aagcctaagcttaaacctaaacctaaacctaagcttttaactatgaaaattcaaaatccacttactactatcagtccatgcaaagtagaaaccgattgttggacggagaattgcggcgatgaggaagaccaagtacattgtgatgtgagcaatgaatcgagcaagtggaacgcacattgttgtaccctttgttggcataaatgcatgaagcatcacaaggaatggcatcaggatacaggctcgcagaaaacgccaagcatctcgttttggcttgattccatagttgtaccagtctgaaaa | tgtatgaggtcagctataaggccattagaaagtctatggtaggtaggcacgattacgcctcatcatcgcctacggctcgcctcaggacttcaccctcaaaaacagttacctgatctgaagacagacttaatagttgtctgtgaattggtggagcacgtgaattgtctcatttgagaatccatagccatttgaagacgcggtgatgagatttcagtcattctttccgggcagtagtttctctgaaattcaatttaaattctcccaatatctaaaatttaacacaaattcttacattagcaa | |||
| Mapping_target | K01A11 | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (42) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00562702 | |||
| WBVar00245380 | |||||
| WBVar01330237 | |||||
| WBVar00056459 | |||||
| WBVar01261892 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00004976 | |||
| Transcript | K01A11.4a.1 | VEP_consequence | splice_region_variant,intron_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | K01A11.4a.1:c.944-8C>A | ||||
| Intron_number | 8/16 | ||||
| K01A11.4b.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | K01A11.4b.1:c.515-8C>A | ||||
| Intron_number | 7/14 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
