WormBase Tree Display for Variation: WBVar00030538
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| WBVar00030538 | Name | Public_name | WBVar00030538 | ||
|---|---|---|---|---|---|
| Other_name | haw37230 | ||||
| haw139293 | |||||
| cewivar00192232 | |||||
| Y55B1AR.2b.1:c.1754+175A>T | |||||
| Y55B1AR.2d.1:c.1037+175A>T | |||||
| Y55B1AR.2c.1:c.1457+175A>T | |||||
| Y55B1AR.2a.1:c.1682+175A>T | |||||
| HGVSg | CHROMOSOME_III:g.591214T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55B1AR | |
| Flanking_sequences | tccaactttatataaatttctgaat | ttacgttaattttcttgaaaaaaaa | |||
| Mapping_target | Y55B1AR | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01389215 | |||
| WBVar00559158 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021906 | |||
| Transcript | Y55B1AR.2c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55B1AR.2c.1:c.1457+175A>T | ||||
| Intron_number | 7/9 | ||||
| Y55B1AR.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55B1AR.2a.1:c.1682+175A>T | ||||
| Intron_number | 8/10 | ||||
| Y55B1AR.2d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55B1AR.2d.1:c.1037+175A>T | ||||
| Intron_number | 7/9 | ||||
| Y55B1AR.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55B1AR.2b.1:c.1754+175A>T | ||||
| Intron_number | 8/8 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw37230 | ||||
| Method | WGS_Hawaiian_Waterston |
