WormBase Tree Display for Variation: WBVar00022088
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| WBVar00022088 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00022088 | |||
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_II:g.15224330G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y46E12BL | |
| Flanking_sequences | tttgcatgtttttgaaaacctgctg | aatttgactgtttctgactttattt | |||
| Mapping_target | Y46E12BL | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| History | Acquires_merge | WBVar00232813 | |||
| WBVar01386543 | |||||
| WBVar01322141 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00305747 | |||
| WBGene00021597 | |||||
| Transcript | Y46E12BL.4h.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y46E12BL.4h.1:c.1016-394G>A | ||||
| Intron_number | 3/5 | ||||
| Y46E12BL.4f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y46E12BL.4f.1:c.665-394G>A | ||||
| Intron_number | 3/5 | ||||
| Y46E12BL.13 | |||||
| Y46E12BL.4i.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y46E12BL.4i.1:c.806-394G>A | ||||
| Intron_number | 5/7 | ||||
| Y46E12BL.4d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y46E12BL.4d.1:c.164-394G>A | ||||
| Intron_number | 1/3 | ||||
| Y46E12BL.4c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y46E12BL.4c.1:c.1010-394G>A | ||||
| Intron_number | 4/7 | ||||
| Y46E12BL.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y46E12BL.4b.1:c.671-394G>A | ||||
| Intron_number | 3/6 | ||||
| Y46E12BL.4e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y46E12BL.4e.1:c.854-394G>A | ||||
| Intron_number | 3/5 | ||||
| Y46E12BL.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y46E12BL.4a.1:c.665-394G>A | ||||
| Intron_number | 3/4 | ||||
| Y46E12BL.4g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y46E12BL.4g.1:c.848-394G>A | ||||
| Intron_number | 3/5 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw35540 | ||||
| Method | WGS_Hawaiian_Waterston |
