WormBase Tree Display for Gene: WBGene00021597
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| WBGene00021597 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | spsb-1 | Person_evidence | WBPerson7030 | |||||
| WBPerson1657 | |||||||||
| Sequence_name | Y46E12BL.4 | ||||||||
| Molecular_name (27) | |||||||||
| Other_name | CELE_Y46E12BL.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | spsb-1 | ||||||||
| DB_info | Database | AceView | gene | 2P509 | |||||
| WormQTL | gene | WBGene00021597 | |||||||
| WormFlux | gene | WBGene00021597 | |||||||
| NDB | locus_tag | CELE_Y46E12BL.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021597|UniProtKB=Q965N6 | |||||||
| family | PTHR12245 | ||||||||
| NCBI | gene | 266876 | |||||||
| RefSeq | protein | NM_001377908.2 | |||||||
| NM_001381674.1 | |||||||||
| NM_001306634.3 | |||||||||
| NM_001377910.2 | |||||||||
| NM_001377912.2 | |||||||||
| NM_064920.7 | |||||||||
| NM_001381675.1 | |||||||||
| NM_001393240.1 | |||||||||
| NM_001393241.1 | |||||||||
| TrEMBL | UniProtAcc | Q965N6 | |||||||
| U4PM56 | |||||||||
| U4PBQ2 | |||||||||
| U4PRE9 | |||||||||
| U4PBQ5 | |||||||||
| A0A5S9MNQ7 | |||||||||
| U4PBC3 | |||||||||
| U4PEK0 | |||||||||
| U4PBC8 | |||||||||
| UniProt_GCRP | UniProtAcc | Q965N6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 23 Apr 2010 11:09:36 | WBPerson2970 | Name_change | CGC_name | spsb-1 | ||||
| 3 | 30 Nov 2019 14:21:09 | WBPerson1983 | Event | Acquires_merge | WBGene00021598 | ||||
| Acquires_merge | WBGene00021598 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spsb | ||||||||
| Allele (818) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00004197 | ||||||||
| 00004198 | |||||||||
| 00125892 | |||||||||
| Contained_in_operon | CEOP2753 | ||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00001499 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021596 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Expressed in arcade cell; excretory system; hypodermis; intestine; and pharyngeal muscle cell. Is an ortholog of human SPSB1 (splA/ryanodine receptor domain and SOCS box containing 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46E12BL.4a | |||||||
| Y46E12BL.4b | |||||||||
| Y46E12BL.4c | |||||||||
| Y46E12BL.4d | |||||||||
| Y46E12BL.4e | |||||||||
| Y46E12BL.4f | |||||||||
| Y46E12BL.4g | |||||||||
| Y46E12BL.4h | |||||||||
| Y46E12BL.4i | |||||||||
| Corresponding_CDS_history | Y46E12BL.4:wp147 | ||||||||
| Y46E12BL.4:wp179 | |||||||||
| Corresponding_transcript | Y46E12BL.4a.1 | ||||||||
| Y46E12BL.4b.1 | |||||||||
| Y46E12BL.4c.1 | |||||||||
| Y46E12BL.4d.1 | |||||||||
| Y46E12BL.4e.1 | |||||||||
| Y46E12BL.4f.1 | |||||||||
| Y46E12BL.4g.1 | |||||||||
| Y46E12BL.4h.1 | |||||||||
| Y46E12BL.4i.1 | |||||||||
| Other_sequence (43) | |||||||||
| Associated_feature (24) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056666 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056665 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11306 | ||||||||
| Expr1018483 | |||||||||
| Expr1022452 | |||||||||
| Expr1039449 | |||||||||
| Expr1160137 | |||||||||
| Expr1160138 | |||||||||
| Expr2007579 | |||||||||
| Expr2016096 | |||||||||
| Expr2025815 | |||||||||
| Expr2034331 | |||||||||
| Drives_construct | WBCnstr00018756 | ||||||||
| WBCnstr00024491 | |||||||||
| Construct_product | WBCnstr00024491 | ||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (140) | |||||||||
| Interaction | WBInteraction000169883 | ||||||||
| Map_info | Map | II | Position | 24.5348 | Error | 0.026881 | |||
| Positive | Positive_clone | Y46E12BL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
