WormBase Tree Display for Variation: WBVar00021968
expand all nodes | collapse all nodes | view schema
WBVar00021968 | Name | Public_name | WBVar00021968 | ||
---|---|---|---|---|---|
Other_name | haw35516 | ||||
haw137969 | |||||
cewivar00145783 | |||||
Y46E12BL.4f.1:c.49+1662A>T | |||||
Y46E12BL.4a.1:c.49+1662A>T | |||||
Y46E12BL.4i.1:c.184+1662A>T | |||||
Y46E12BL.4b.1:c.49+1662A>T | |||||
HGVSg | CHROMOSOME_II:g.15209233A>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y46E12BM | |
Flanking_sequences | gcggcaaaaaatatgaagaaaatcc | ataaattttgccgtaaaacgcgaaa | |||
Mapping_target | Y46E12BM | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | WGS_De_Bono | |||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00557834 | |||
WBVar01386500 | |||||
Status | Live | ||||
Affects | Gene | WBGene00021597 | |||
Transcript | Y46E12BL.4f.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4f.1:c.49+1662A>T | ||||
Intron_number | 1/5 | ||||
Y46E12BL.4i.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4i.1:c.184+1662A>T | ||||
Intron_number | 3/7 | ||||
Y46E12BL.4a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4a.1:c.49+1662A>T | ||||
Intron_number | 1/4 | ||||
Y46E12BL.4b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y46E12BL.4b.1:c.49+1662A>T | ||||
Intron_number | 1/6 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw35516 | ||||
Method | WGS_Hawaiian_Waterston |