WormBase Tree Display for Variation: WBVar00017679
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| WBVar00017679 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00017679 | ||||
| Other_name | cbs16150 | |||||
| cb16150 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrI:g.5382052A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0071c2 | ||
| Flanking_sequences | tacgaaatggacaactccaagaaat | ctcgttttacatcttgagaatggac | ||||
| Mapping_target | cb25.fpc0071c2 | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 246 203 176 171 157 47 | ||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 768 232 | ||||
| GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 768 232 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 768 232 | ||||
| CTNAG | BstDEI, DdeI | 760 240 | ||||
| GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 766 234 | ||||
| CAC | HindI | 292 195 107 75 57 51 39 36 35 30 19 17 17 11 8 5 3 3 | ||||
| TCNGA | Hpy188I | 392 290 237 41 26 14 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 216 153 114 113 85 64 60 47 44 36 30 23 6 5 4 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 374 246 176 157 47 | |||
| GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 1000 | ||||
| GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 1000 | ||||
| GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 1000 | ||||
| CTNAG | BstDEI, DdeI | 1000 | ||||
| GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 1000 | ||||
| CAC | HindI | 292 195 107 92 57 51 39 36 35 30 19 15 11 8 5 3 3 2 | ||||
| TCNGA | Hpy188I | 392 290 278 26 14 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 216 153 149 114 113 60 47 44 36 30 23 6 5 4 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00026596 | ||||
| Transcript | CBG03815.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG03815.1:c.1452T>C | |||||
| HGVSp | CBP36950.1:p.Ile484%3D | |||||
| cDNA_position | 1507 | |||||
| CDS_position | 1452 | |||||
| Protein_position | 484 | |||||
| Exon_number | 11/16 | |||||
| Codon_change | atT/atC | |||||
| Amino_acid_change | I | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
