WormBase Tree Display for Variation: WBVar00012916
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| WBVar00012916 | Name | Public_name | WBVar00012916 | ||
|---|---|---|---|---|---|
| Other_name | pas14180 | ||||
| cewivar00077746 | |||||
| CE51164:p.Thr187= | |||||
| T07D3.4b.1:c.561A>G | |||||
| CE13361:p.Thr372= | |||||
| T07D3.4a.1:c.1116A>G | |||||
| HGVSg | CHROMOSOME_II:g.890570A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | T07D3 | |
| Flanking_sequences | tactgtacaagatcttgtgagggtactgtagacgtactgtaaatttcaattttgtcaaattccagccgacggcaccaaatacaagttcacctaccctatctacgatccttggtgtgcagcggatcttcacggtcatattttctgggtctcctgtaatccactggagaaaattttggtaacttttttcagggaagtttttgattaatcttcgaatttccaggcagagtatggagaagactggaaaaaggatcacctctcatccgagtacagatggaattattcgcagaaaaatgtgcaaac | aacgggaaatatacagcggagcagatgaagatgctttatagaaaggctacaatcgggttccgtgctgtacacagagctttaaactcatttatttctaggattcctattttataaaatgaataaattttttggaagcagcggacattttacgggtctcagcaagcacttaaaaaatatcagagagcagcggacgtcctacgggtttcagaaagcagcggacaacttcctgtctttggaaagcagctgacatcttatgggctcgggaaacgattgcttacctgatttctaatatctggagta | |||
| Mapping_target | T07D3 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00020307 | |||
| Transcript | T07D3.4b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | T07D3.4b.1:c.561A>G | ||||
| HGVSp | CE51164:p.Thr187= | ||||
| cDNA_position | 561 | ||||
| CDS_position | 561 | ||||
| Protein_position | 187 | ||||
| Exon_number | 4/4 | ||||
| Codon_change | acA/acG | ||||
| Amino_acid_change | T | ||||
| T07D3.4a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T07D3.4a.1:c.1116A>G | ||||
| HGVSp | CE13361:p.Thr372= | ||||
| cDNA_position | 1259 | ||||
| CDS_position | 1116 | ||||
| Protein_position | 372 | ||||
| Exon_number | 10/11 | ||||
| Codon_change | acA/acG | ||||
| Amino_acid_change | T | ||||
| Method | WGS_Pasadena_Quinlan |
