WormBase Tree Display for Variation: WBVar00006606
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| WBVar00006606 | Name | Public_name | WBVar00006606 | ||
|---|---|---|---|---|---|
| Other_name | pas12918 | ||||
| snp_B0412[1] | |||||
| haw37490 | |||||
| haw139487 | |||||
| cewivar00017892 | |||||
| B0412.3c.1:c.428+810A>T | |||||
| B0412.3b.1:c.2036+810A>T | |||||
| B0412.3a.1:c.2849+810A>T | |||||
| HGVSg | CHROMOSOME_III:g.804250A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | B0412 | |
| Flanking_sequences | ttcaagtcggaaacaggtcatttaatttggctgctaccccacttgaaaacacttattatgttttgatacaaatcatattaccaatacttatgcaccaaaaaaagtgtttttctttttgaaaaccaccattggcataaaagtgctattttttacaagtaggtcgtatacaaatataacatattttggtggcctgcccactttttcggaacataactccaaacgttcgcgatacgacaaagttattcaatcagctcctaaaaactgggtcacaaacacaggaaattattttttctataacaa | atactgctacaaacacacaaggcaactgatgtcatatattactcatgttggtcacagctatctaaaatagaaattgaaacacagcgtatagctttagctgatacaatgatttggagccgagttgatcaaaatgatgttattctagttgaaacaatgatgtgagccgaagtactgatgccacaaatagataatagagatagaatgctttttaaaggtggagtgccgaaatctgagactttgcttttttagaccaaaaatgactcaaaactaccgaatgtagtaatgagacgttatgaaaat | |||
| Mapping_target | B0412 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (34) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00031838 | |||
| WBVar00559352 | |||||
| WBVar01255162 | |||||
| WBVar01389602 | |||||
| WBVar00242850 | |||||
| WBVar01322452 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00015173 | |||
| Transcript | B0412.3c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0412.3c.1:c.428+810A>T | ||||
| Intron_number | 2/6 | ||||
| B0412.3b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0412.3b.1:c.2036+810A>T | ||||
| Intron_number | 8/12 | ||||
| B0412.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | B0412.3a.1:c.2849+810A>T | ||||
| Intron_number | 13/18 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
