WormBase Tree Display for Gene: WBGene00015173
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| WBGene00015173 | SMap | S_parent | Sequence | B0412 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | trpp-11 | Person_evidence | WBPerson3188 | |||||
| Sequence_name | B0412.3 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_B0412.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | trpp-11 | ||||||||
| DB_info | Database | AceView | gene | 3B425 | |||||
| WormQTL | gene | WBGene00015173 | |||||||
| WormFlux | gene | WBGene00015173 | |||||||
| NDB | locus_tag | CELE_B0412.3 | |||||||
| Panther | gene | CAEEL|Gene_ORFName=CELE_B0412.3|UniProtKB=A0A131MD37 | |||||||
| family | PTHR14374 | ||||||||
| NCBI | gene | 175236 | |||||||
| RefSeq | protein | NM_001322637.3 | |||||||
| NM_001322633.2 | |||||||||
| NM_064863.7 | |||||||||
| NM_001381714.1 | |||||||||
| NM_001322646.4 | |||||||||
| TrEMBL | UniProtAcc | A0A131MCR0 | |||||||
| A0A131MBH5 | |||||||||
| A0A131MCW2 | |||||||||
| A0A131MBP2 | |||||||||
| A0A131MD37 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A131MD37 | |||||||
| OMIM | gene | 614138 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Aug 2013 16:41:57 | WBPerson2970 | Name_change | CGC_name | trpp-11 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trpp | ||||||||
| Allele (374) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002017 | ||||||||
| Contained_in_operon | CEOP3036 | ||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2S. Is an ortholog of human TRAPPC11 (trafficking protein particle complex subunit 11). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110287 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25751) | ||||
| Molecular_info | Corresponding_CDS | B0412.3a | |||||||
| B0412.3b | |||||||||
| B0412.3c | |||||||||
| B0412.3d | |||||||||
| B0412.3e | |||||||||
| Corresponding_CDS_history | B0412.3:wp252 | ||||||||
| Corresponding_transcript | B0412.3a.1 | ||||||||
| B0412.3b.1 | |||||||||
| B0412.3c.1 | |||||||||
| B0412.3d.1 | |||||||||
| B0412.3e.1 | |||||||||
| Other_sequence | Tcir_isotig03493 | ||||||||
| CBC08751_1 | |||||||||
| AS17276 | |||||||||
| JI165818.1 | |||||||||
| Tcir_isotig03494 | |||||||||
| Associated_feature | WBsf658582 | ||||||||
| WBsf658583 | |||||||||
| WBsf991161 | |||||||||
| WBsf991162 | |||||||||
| WBsf991163 | |||||||||
| WBsf1014136 | |||||||||
| WBsf1014137 | |||||||||
| WBsf1014138 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039033 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00081126 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066647 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00064118 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006510 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028129 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009758 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9406 | ||||||||
| Expr1014292 | |||||||||
| Expr1036497 | |||||||||
| Expr1143195 | |||||||||
| Expr2017507 | |||||||||
| Expr2035646 | |||||||||
| Drives_construct | WBCnstr00029031 | ||||||||
| Construct_product | WBCnstr00013971 | ||||||||
| WBCnstr00029031 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (81) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Map | III | Position | -25.8812 | |||||
| Positive | Positive_clone | B0412 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005736 | ||||||||
| WBPaper00034662 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
