WormBase Tree Display for Variation: WBVar00003488
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| WBVar00003488 | Name | Public_name | WBVar00003488 | ||
|---|---|---|---|---|---|
| Other_name | haw31820 | ||||
| haw135198 | |||||
| cewivar00187684 | |||||
| Y38F1A.10e.1:c.799-333T>A | |||||
| Y38F1A.10a.1:c.790-1244T>A | |||||
| Y38F1A.10f.1:c.799-1244T>A | |||||
| Y38F1A.10c.1:c.790-333T>A | |||||
| Y38F1A.10b.1:c.129+179T>A | |||||
| HGVSg | CHROMOSOME_II:g.13020224A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y38F1A | |
| Flanking_sequences | atgacctaatttgataatataaaat | tttttttaaaacatcgtttcgttgt | |||
| Mapping_target | Y38F1A | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01380701 | |||
| WBVar00555063 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003144 | |||
| Transcript | Y38F1A.10f.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y38F1A.10f.1:c.799-1244T>A | ||||
| Intron_number | 6/10 | ||||
| Y38F1A.10a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y38F1A.10a.1:c.790-1244T>A | ||||
| Intron_number | 7/12 | ||||
| Y38F1A.10c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y38F1A.10c.1:c.790-333T>A | ||||
| Intron_number | 7/13 | ||||
| Y38F1A.10e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y38F1A.10e.1:c.799-333T>A | ||||
| Intron_number | 7/13 | ||||
| Y38F1A.10b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y38F1A.10b.1:c.129+179T>A | ||||
| Intron_number | 2/8 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw31820 | ||||
| Method | WGS_Hawaiian_Waterston |
