WormBase Tree Display for Variation: WBVar00000494
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WBVar00000494 | Evidence | Paper_evidence | WBPaper00003186 | |||||
---|---|---|---|---|---|---|---|---|
Name | Public_name | bn102 | ||||||
Other_name | ZK381.4a.2:c.987G>A | |||||||
CE07628:p.Trp370Ter | ||||||||
ZK381.4b.1:c.1110G>A | ||||||||
CE25689:p.Trp329Ter | ||||||||
ZK381.4a.1:c.987G>A | ||||||||
HGVSg | CHROMOSOME_IV:g.6975957C>T | |||||||
Sequence_details | SMap | S_parent | Sequence | ZK381 | ||||
Flanking_sequences | tatttcagctaagaagtcttttgaggattg | gatgttgttggagtcgcgaaagacttggag | ||||||
Mapping_target | ZK381 | |||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00003186 | |||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00034443 | |||||||
Laboratory | SS | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00003992 | ||||||
Transcript | ZK381.4b.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | |||||||
HGVSc | ZK381.4b.1:c.1110G>A | |||||||
HGVSp | CE07628:p.Trp370Ter | |||||||
cDNA_position | 1110 | |||||||
CDS_position | 1110 | |||||||
Protein_position | 370 | |||||||
Exon_number | 6/9 | |||||||
Codon_change | tgG/tgA | |||||||
Amino_acid_change | W/* | |||||||
ZK381.4a.2 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | |||||||
HGVSc | ZK381.4a.2:c.987G>A | |||||||
HGVSp | CE25689:p.Trp329Ter | |||||||
cDNA_position | 1041 | |||||||
CDS_position | 987 | |||||||
Protein_position | 329 | |||||||
Exon_number | 7/11 | |||||||
Codon_change | tgG/tgA | |||||||
Amino_acid_change | W/* | |||||||
ZK381.4a.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | |||||||
HGVSc | ZK381.4a.1:c.987G>A | |||||||
HGVSp | CE25689:p.Trp329Ter | |||||||
cDNA_position | 1002 | |||||||
CDS_position | 987 | |||||||
Protein_position | 329 | |||||||
Exon_number | 6/10 | |||||||
Codon_change | tgG/tgA | |||||||
Amino_acid_change | W/* | |||||||
Interactor | WBInteraction000502232 | |||||||
Genetics | Interpolated_map_position | IV | 3.25423 | |||||
Description | Phenotype | WBPhenotype:0001036 | Paper_evidence | WBPaper00003186 | ||||
Curator_confirmed | WBPerson1148 | |||||||
Remark | Figure 5 | Paper_evidence | WBPaper00003186 | |||||
Curator_confirmed | WBPerson1148 | |||||||
Temperature_sensitive | Heat_sensitive | 26 | Paper_evidence | WBPaper00003186 | ||||
Curator_confirmed | WBPerson1148 | |||||||
Reference | WBPaper00003186 | |||||||
WBPaper00010240 | ||||||||
WBPaper00023217 | ||||||||
Method | Substitution_allele |