WormBase Tree Display for Variation: WBVar00000254

WBVar00000254 Evidence: Paper_evidence: WBPaper00006306
  Name: Public_name: ar479
    Other_name: CE36959:p.Trp87Ter
      Y39H10A.3a.1:c.405G>A
      Y39H10A.3b.1:c.261G>A
      CE26073:p.Trp135Ter
    HGVSg: CHROMOSOME_V:g.3745224G>A
  Sequence_details: SMap: S_parent: Sequence: Y39H10A
    Flanking_sequences: ctccccattcacaattctcgacgatggctg agcgcattcgatctggagcaagagttcgca
    Mapping_target: Y39H10A
    Type_of_mutation: Substitution: g a Paper_evidence: WBPaper00006306
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00008043
    Laboratory: GS
    Status: Live
  Affects: Gene: WBGene00003479
    Transcript: Y39H10A.3a.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: Y39H10A.3a.1:c.405G>A
        HGVSp: CE26073:p.Trp135Ter
        cDNA_position: 407
        CDS_position: 405
        Protein_position: 135
        Exon_number: 3/7
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
      Y39H10A.3b.1 VEP_consequence: stop_gained
        VEP_impact: HIGH
        HGVSc: Y39H10A.3b.1:c.261G>A
        HGVSp: CE36959:p.Trp87Ter
        cDNA_position: 263
        CDS_position: 261
        Protein_position: 87
        Exon_number: 3/7
        Codon_change: tgG/tgA
        Amino_acid_change: W/*
    Interactor: WBInteraction000501484
  Genetics: Interpolated_map_position: V -8.0207
  Description: Phenotype: WBPhenotype:0001426 Paper_evidence: WBPaper00004883
        Curator_confirmed: WBPerson712
        Remark: Animals had almost no uptake of GFP by coelomocytes. Paper_evidence: WBPaper00004883
            Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: dpy-20(e1282); arIs37[pmyo-3::ssGFP] Paper_evidence: WBPaper00004883
              Curator_confirmed: WBPerson712
    Phenotype_not_observed: WBPhenotype:0000643 Paper_evidence: WBPaper00004883
        Curator_confirmed: WBPerson712
        Remark: Animals had normal movement. Paper_evidence: WBPaper00004883
            Curator_confirmed: WBPerson712
        Phenotype_assay: Genotype: dpy-20(e1282); arIs37[pmyo-3::ssGFP] Paper_evidence: WBPaper00004883
              Curator_confirmed: WBPerson712
  Disease_info: Models_disease: DOID:14717
    Models_disease_in_annotation: WBDOannot00000278
  Reference: WBPaper00004883
  Method: Substitution_allele