WormBase Tree Display for Variation: WBVar00000007
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WBVar00000007 | Evidence | Author_evidence | Curtis L | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | ad446 | |||||||
HGVSg | CHROMOSOME_III:g.5612625_5616891delinsAAAAAA | ||||||||
Sequence_details | SMap | S_parent | Sequence | C05D2 | |||||
Flanking_sequences | agactgggcaaaaatctttgacgatctcgaaaatgtggtggtgaa | aaaatacaaaataatgaagtaggcacgtgtatgtaggcag | |||||||
Mapping_target | C05D2 | ||||||||
Type_of_mutation | Insertion | aaaaaa | |||||||
Deletion | |||||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00027310 | ||||||||
WBStrain00027351 | |||||||||
Laboratory | DA | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00015467 | |||||||
WBGene00000239 | |||||||||
Transcript | C05D2.4b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | ||||||
VEP_impact | HIGH | ||||||||
cDNA_position | 213-? | ||||||||
CDS_position | 198-? | ||||||||
Protein_position | 66-? | ||||||||
Intron_number | 3-8/9 | ||||||||
Exon_number | 3-10/10 | ||||||||
C05D2.3.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
Intron_number | 2-7/9 | ||||||||
Exon_number | 1-7/10 | ||||||||
C05D2.4a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||||||
VEP_impact | HIGH | ||||||||
cDNA_position | 213-? | ||||||||
CDS_position | 198-? | ||||||||
Protein_position | 66-? | ||||||||
Intron_number | 3-7/8 | ||||||||
Exon_number | 3-9/9 | ||||||||
Interactor | WBInteraction000500584 | ||||||||
Isolation | Mutagen | EMS | |||||||
Forward_genetics | standard phenotypic screen | ||||||||
Genetics | Interpolated_map_position | III | -1.46914 | ||||||
Mapping_data | In_multi_point | 2312 | |||||||
2693 | |||||||||
Description | Phenotype (23) | ||||||||
Phenotype_not_observed | WBPhenotype:0000039 | Paper_evidence | WBPaper00040570 | ||||||
Curator_confirmed | WBPerson8126 | ||||||||
Remark | Fig.1 (lifespan extension upon reserpine treatment, not different from wild type) | Paper_evidence | WBPaper00040570 | ||||||
Curator_confirmed | WBPerson8126 | ||||||||
Affected_by | Molecule | WBMol:00002955 | Paper_evidence | WBPaper00040570 | |||||
Curator_confirmed | WBPerson8126 | ||||||||
WBPhenotype:0001101 | Paper_evidence | WBPaper00038382 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | Clozapine-induced increases in egg laying was present. | Paper_evidence | WBPaper00038382 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Affected_by | Molecule | WBMol:00003634 | Paper_evidence | WBPaper00038382 | |||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001765 | Paper_evidence | WBPaper00031936 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Mutants defective in the synthesis and reception of nonessential excitatory neurotransmitters respond normally to CO2 | Paper_evidence | WBPaper00031936 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00031936 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Treatment | 10% CO2 | Paper_evidence | WBPaper00031936 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Disease_info | Models_disease | DOID:809 | |||||||
DOID:0050742 | |||||||||
Models_disease_in_annotation | WBDOannot00000679 | ||||||||
WBDOannot00000680 | |||||||||
Reference (9) | |||||||||
Method | Deletion_and_insertion_allele |