WormBase Tree Display for Variation: WBVar00000007
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| WBVar00000007 | Evidence | Author_evidence | Curtis L | ||
|---|---|---|---|---|---|
| Name | Public_name | ad446 | |||
| HGVSg | CHROMOSOME_III:g.5612625_5616891delinsAAAAAA | ||||
| Sequence_details | SMap | S_parent | Sequence | C05D2 | |
| Flanking_sequences | agactgggcaaaaatctttgacgatctcgaaaatgtggtggtgaa | aaaatacaaaataatgaagtaggcacgtgtatgtaggcag | |||
| Mapping_target | C05D2 | ||||
| Type_of_mutation | Insertion | aaaaaa | |||
| Deletion | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00027310 | ||||
| WBStrain00027351 | |||||
| Laboratory | DA | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00015467 | |||
| WBGene00000239 | |||||
| Transcript | C05D2.4b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| cDNA_position | 213-? | ||||
| CDS_position | 198-? | ||||
| Protein_position | 66-? | ||||
| Intron_number | 3-8/9 | ||||
| Exon_number | 3-10/10 | ||||
| C05D2.3.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 2-7/9 | ||||
| Exon_number | 1-7/10 | ||||
| C05D2.4a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 213-? | ||||
| CDS_position | 198-? | ||||
| Protein_position | 66-? | ||||
| Intron_number | 3-7/8 | ||||
| Exon_number | 3-9/9 | ||||
| Interactor | WBInteraction000500584 | ||||
| Isolation | Mutagen | EMS | |||
| Forward_genetics | standard phenotypic screen | ||||
| Genetics | Interpolated_map_position | III | -1.46914 | ||
| Mapping_data | In_multi_point | 2312 | |||
| 2693 | |||||
| Description (2) | |||||
| Disease_info | Models_disease | DOID:809 | |||
| DOID:0050742 | |||||
| Models_disease_in_annotation | WBDOannot00000679 | ||||
| WBDOannot00000680 | |||||
| Reference | WBPaper00038382 | ||||
| WBPaper00040570 | |||||
| WBPaper00043908 | |||||
| WBPaper00031936 | |||||
| WBPaper00032335 | |||||
| WBPaper00011911 | |||||
| WBPaper00001861 | |||||
| WBPaper00014504 | |||||
| WBPaper00015782 | |||||
| Method | Deletion_and_insertion_allele |
