WormBase Tree Display for Gene: WBGene00194937

WBGene00194937 SMap: S_parent: Sequence: Cbre_Contig9
  Identity: Version: 8
    Name: CGC_name: Cbn-pgp-5 From_analysis: Inferred_from_orthology
      Sequence_name: CBN32748
      Molecular_name: CBN32748
        CBN32748.1
        CN37682
      Other_name: Cbn-pgp-5.1 From_analysis: Inferred_from_orthology
      Public_name: Cbn-pgp-5
    Species: Caenorhabditis brenneri
    History: Version_change: 1 27 Jan 2010 11:28:58 WBPerson615 Event: Created
        2 20 Mar 2018 10:26:10 WBPerson4025 Name_change: CGC_name: Cbn-pgp-5
        3 08 Feb 2019 15:42:27 WBPerson1983 Name_change: CGC_name: Cbn-pgp-5.1
                Other_name: Cbn-pgp-5
        4 08 May 2019 10:09:28 WBPerson1983 Name_change: CGC_name: Removed
        5 04 Feb 2020 15:43:57 WBPerson1983 Name_change: CGC_name: Cbn-pgp-5.1
        6 04 Jun 2020 14:38:22 WBPerson1983 Name_change: CGC_name: Removed
        7 28 May 2021 19:05:19 WBPerson1983 Name_change: CGC_name: Cbn-pgp-5.1
        8 28 Jul 2021 11:12:26 WBPerson1983 Name_change: CGC_name: Cbn-pgp-5
                Other_name: Cbn-pgp-5.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pgp
    RNASeq_FPKM: WBls:0000002 0.145042 From_analysis: RNASeq.brenneri.WBls:0000002.control_mean
        0.145192 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
        0.180839 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
        0.186972 From_analysis: RNASeq.brenneri.WBls:0000002.control_median
        0.193105 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
        0.194325 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
        0.207592 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        0.241476 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
        0.287889 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
      WBls:0000004 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
            RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
            RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
      WBls:0000024 0.90011 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        1.02264 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        1.09658 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        1.99617 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        2.05453 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
      WBls:0000038 0.344258 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        0.423175 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        0.502092 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 (13)
      WBls:0000101 0.194325 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
        0.281203 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
    GO_annotation: 00230868
      00230869
      00230870
      00230871
      00230872
    Ortholog (16)
    Paralog (56)
    Structured_description: Automated_description: Predicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans pgp-5. In C. elegans, pgp-5 is involved in several processes, including defense response to bacterium; response to nematicide; and stress response to metal ion. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN32748
    Corresponding_transcript: CBN32748.1
    Other_sequence: HCC00172_1
      MIC02249_1
      DI00477
      HC05919
      MI04501
      JO469859.1
      DIC00160_1
      MI01843
  Remark: [190507 pad] The CGC name Cbn-pgp-5.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [200603 pad] The CGC name Cbn-pgp-5.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene