WormBase Tree Display for Gene: WBGene00146796

WBGene00146796 SMap: S_parent: Sequence: Cbre_Contig17
  Identity: Version: 2
    Name: CGC_name: Cbn-sysm-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBN08071
      Molecular_name: CBN08071
        CBN08071.1
        CN18420
      Public_name: Cbn-sysm-1
    Species: Caenorhabditis brenneri
    History: Version_change: 1 01 Oct 2008 13:29:51 WBPerson4055 Event: Imported: from NGASP
        2 04 Jun 2020 14:38:21 WBPerson1983 Name_change: CGC_name: Cbn-sysm-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sysm
    RNASeq_FPKM: WBls:0000002 0.833753 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        1.55114 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
        1.56094 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
        17.1801 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
            RNASeq.brenneri.WBls:0000002.control_median
        2.11259 From_analysis: RNASeq.brenneri.WBls:0000002.control_mean
      WBls:0000004 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
            RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
            RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
      WBls:0000024 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        20.6643 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        21.6485 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        28.7983 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        32.1282 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        39.8123 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
      WBls:0000038 10.4034 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
        8.36493 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        9.38416 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
      WBls:0000041 (15)
      WBls:0000101 10.2009 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
        1.55114 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
    Ortholog: WBGene00011979 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00033879 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00053235 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00054371 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      CSP26.g6854 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g6856 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12234 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9225 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9672 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7037 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g23006 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17160 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g17162 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cnig_chr_II.g5363 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_00169.g6180 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00546.g12683 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09406 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006530 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00054373 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: ShK domain-like and ShKT domain. Is an ortholog of C. elegans sysm-1. In C. elegans, sysm-1 is involved in antibacterial innate immune response. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN08071
    Corresponding_transcript: CBN08071.1
  Experimental_info: Microarray_results: GPL14142_CBN08071_522-581_0.973_1_A
  Method: Gene