WormBase Tree Display for Gene: WBGene00116165
expand all nodes | collapse all nodes | view schema
| WBGene00116165 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | Sequence_name | PPA26611 | |||||||
| Molecular_name | PPA26611 | ||||||||
| PPA26611.1 | |||||||||
| PP51851 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000085035 | ||||||||
| UMM-S7-39.61 | Person_evidence | WBPerson606 | |||||||
| Public_name | PPA26611 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 11:54:47 | WBPerson2970 | Name_change | CGC_name | Ppa-glc-3 | ||||
| 3 | 20 Mar 2018 10:26:13 | WBPerson4025 | Name_change | CGC_name | Removed | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||||
| GO_annotation | 00185317 | ||||||||
| 00185318 | |||||||||
| 00185319 | |||||||||
| 00185320 | |||||||||
| 00185321 | |||||||||
| 00185322 | |||||||||
| Ortholog (11) | |||||||||
| Paralog (120) | |||||||||
| Structured_description | Automated_description | Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans avr-15 and glc-1. In C. elegans, avr-15 is involved in action potential; locomotion involved in locomotory behavior; and regulation of pharyngeal pumping. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA26611 | |||||||
| Corresponding_transcript | PPA26611.1 | ||||||||
| Other_sequence | AM887979.1 | ||||||||
| JI175566.1 | |||||||||
| FC550530.1 | |||||||||
| Oden_isotig24471 | |||||||||
| AM887978.1 | |||||||||
| PPC18342_1 | |||||||||
| AY727925.1 | |||||||||
| Dviv_isotig26111 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_799 | |||||||
| GPL14372_Probes_801 | |||||||||
| GPL14372_Probes_802 | |||||||||
| GPL14372_Probes_803 | |||||||||
| Remark | [180319 gw3] The CGC name Ppa-glc-3 was deleted as there was no evidence to support it. This name has correctly been assigned to WBGene00090403 | Curator_confirmed | WBPerson4025 | ||||||
| Method | Gene |
