WormBase Tree Display for Gene: WBGene00108030
expand all nodes | collapse all nodes | view schema
| WBGene00108030 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | CGC_name | Ppa-pax-3 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA18476 | ||||||||
| Molecular_name | PPA18476 | ||||||||
| PPA18476.1 | |||||||||
| PP74040 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000075298 | ||||||||
| UMM-S245-12.28 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-pax-3 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 08 Feb 2019 15:42:30 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 3 | 08 May 2019 10:09:22 | WBPerson1983 | Name_change | CGC_name | Ppa-pax-3 | ||||
| 4 | 04 Feb 2020 15:43:57 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 04 Jun 2020 14:38:21 | WBPerson1983 | Name_change | CGC_name | Ppa-pax-3 | ||||
| 6 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 28 Jul 2021 11:12:27 | WBPerson1983 | Name_change | CGC_name | Ppa-pax-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pax | ||||||||
| Allele | WBVar00601059 | Paper_evidence | WBPaper00036208 | ||||||
| WBVar00601060 | Paper_evidence | WBPaper00036208 | |||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.78499 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 5.35498 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00181556 | ||||||||
| 00181557 | |||||||||
| Ortholog (35) | |||||||||
| Paralog (16) | |||||||||
| Structured_description | Concise_description | Ppa-pax-3 encodes a divergent paired-like homeodomain protein that does not belong to the Q50, K50, or S50 classes; PAX-3 is required for locomotion and vulval development; in Ppa-pax-3 mutant animals, P(5-8).p die of programmed cell death (like in Ppa-lin-39 mutant animals), whereas P(9-11).p survive and form ectopic vulva-like structures; Ppa-pax-3 is a direct target of Ppa-LIN-39/Hox; Ppa-pax-3 mutants also provide genetic evidence for PAX-3 function in myogenesis. | Paper_evidence | WBPaper00030857 | |||||
| WBPaper00036208 | |||||||||
| Person_evidence | WBPerson606 | ||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Jul 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans pax-3. In C. elegans, pax-3 is involved in epidermal cell fate specification; gonad morphogenesis; and hemidesmosome assembly. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA18476 | |||||||
| Corresponding_transcript | PPA18476.1 | ||||||||
| Other_sequence | EX541418.1 | ||||||||
| ES412914.1 | |||||||||
| JI181312.1 | |||||||||
| Oden_isotig28327 | |||||||||
| JI172818.1 | |||||||||
| HBC00705_1 | |||||||||
| JI466342.1 | |||||||||
| BXC05424_1 | |||||||||
| ACC10102_1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_67758 | |||||||
| GPL14372_Probes_67759 | |||||||||
| Reference | WBPaper00029891 | ||||||||
| WBPaper00030857 | |||||||||
| WBPaper00036208 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-pax-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [200204 pad] The CGC name Ppa-pax-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| [210528 pad] The CGC name Ppa-pax-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
