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WormBase Tree Display for Gene: WBGene00107425

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Name Class

WBGene00107425SMapS_parentSequencePPA_ChrIII
IdentityVersion8
NameCGC_namePpa-unc-80From_analysisInferred_from_orthology
Sequence_namePPA17871
Molecular_namePPA17871
PPA17871.1
PP61829
Other_nameGENEPREDICTION_SNAP300000074574
UMM-S2874-3.48Person_evidenceWBPerson606
Public_namePpa-unc-80
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:05WBPerson4055EventImportedfrom NGASP
218 Nov 2010 11:54:47WBPerson2970Name_changeCGC_namePpa-unc-80
318 Nov 2011 16:33:15WBPerson2970Name_changeCGC_nameRemoved
420 Mar 2018 10:26:11WBPerson4025Name_changeCGC_namePpa-unc-80
508 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
608 May 2019 10:09:24WBPerson1983Name_changeCGC_namePpa-unc-80
728 May 2021 19:05:21WBPerson1983Name_changeCGC_nameRemoved
828 Jul 2021 11:12:28WBPerson1983Name_changeCGC_namePpa-unc-80
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:00000323.26584From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001011.08861From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
0From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
RNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
OrthologWBGene00158228Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00027983Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00223829Brugia malayiFrom_analysisWormBase-Compara
WBGene00006812Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00122691Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00244388Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00244389Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g2227Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g16091Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g7029Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g7952Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20590Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7280Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1186Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g2252Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9934Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7116Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g20767Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1938Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00892.g14782Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00892.g14787Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_02666.g17407Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_02666.g17408Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_03452.g18097Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_03620.g18234Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_12140.g23586Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-80Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g21785Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02725.g27697Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02725.g27698Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02725.g27699Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03494.g30373Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04303.g32591Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04303.g32592Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_07000.g37259Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_19881Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07312Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5617Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50426200Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00063566Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrV_pilon.g18189Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00294580Trichuris murisFrom_analysisWormBase-Compara
WBGene00296023Trichuris murisFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Armadillo-type fold; Cation channel complex component UNC80, N-terminal; and UNC80 N-terminal. Is an ortholog of C. elegans unc-80. In C. elegans, unc-80 is involved in several processes, including monoatomic cation homeostasis; positive regulation of locomotion; and response to anesthetic.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA17871
Corresponding_transcriptPPA17871.1
Other_sequence (20)
Experimental_infoMicroarray_resultsGPL14372_Probes_21166
GPL14372_Probes_73152
GPL14372_Probes_73153
Remark[190208 pad] The CGC name Ppa-unc-80 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Ppa-unc-80 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene