WormBase Tree Display for Gene: WBGene00105387
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| WBGene00105387 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | Sequence_name | PPA15833 | |||||||
| Molecular_name | PPA15833 | ||||||||
| PPA15833.1 | |||||||||
| PP51998 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000072558 | ||||||||
| GENEPREDICTION_SNAP300000072559 | |||||||||
| UMM-S250-7.36 | Person_evidence | WBPerson606 | |||||||
| Public_name | PPA15833 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 13:24:32 | WBPerson2970 | Name_change | CGC_name | removed | ||||
| 3 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00105388 | ||||
| 4 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00203533 | ||||
| 5 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-avr-14.2 | ||||
| 6 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 08 May 2019 10:09:27 | WBPerson1983 | Name_change | CGC_name | Ppa-avr-14.2 | ||||
| 8 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| Acquires_merge | WBGene00105388 | ||||||||
| WBGene00203533 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| RNASeq_FPKM | WBls:0000032 | 21.6226 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 7.20753 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00180316 | ||||||||
| 00180317 | |||||||||
| 00180318 | |||||||||
| 00180319 | |||||||||
| 00180320 | |||||||||
| 00180321 | |||||||||
| Ortholog (45) | |||||||||
| Paralog (120) | |||||||||
| Structured_description | Automated_description | Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans avr-14. In C. elegans, avr-14 is involved in several processes, including locomotion involved in locomotory behavior; regulation of pharyngeal pumping; and response to xenobiotic stimulus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA15833 | |||||||
| Corresponding_transcript | PPA15833.1 | ||||||||
| Other_sequence (45) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_31623 | |||||||
| GPL14372_Probes_31625 | |||||||||
| GPL14372_Probes_31626 | |||||||||
| GPL14372_Probes_31627 | |||||||||
| GPL14372_Probes_88589 | |||||||||
| GPL14372_Probes_88591 | |||||||||
| GPL14372_Probes_88592 | |||||||||
| Remark | PPA15833 replaces Ppa-avr-14 as Public_name | Curator_confirmed | WBPerson2970 | ||||||
| [190208 pad] The CGC name Ppa-avr-14.2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| [210528 pad] The CGC name Ppa-avr-14.2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
