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WormBase Tree Display for Gene: WBGene00095890

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Name Class

WBGene00095890SMapS_parentSequencePPA_ChrI
IdentityVersion1
NameSequence_namePPA06336
Molecular_namePPA06336
PPA06336.1
PP18625
Other_nameGENEPREDICTION_SNAP300000062700
UMM-S2842-11.40Person_evidenceWBPerson606
Public_namePPA06336
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:04WBPerson4055EventImportedfrom NGASP
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010115.6815From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
0From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
5.22717From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
OrthologWBGene00004986Caenorhabditis elegansFrom_analysisInparanoid_8
WBGene00004997Caenorhabditis elegansFrom_analysisInparanoid_8
WBGene00052909Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00055742Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00208246Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00121235Caenorhabditis japonicaFrom_analysisInparanoid_8
ParalogWBGene00112783Pristionchus pacificusFrom_analysisInparanoid_8
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Saposin B type domain and Saposin-like. Is an ortholog of C. elegans spp-1 and spp-12. In C. elegans, spp-1 is involved in defense response to other organism and pore formation in membrane of another organism.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA06336
Corresponding_transcriptPPA06336.1
Other_sequencePPC04053_1
Experimental_infoMicroarray_resultsGPL14372_Probes_61145
GPL14372_Probes_61146
GPL14372_Probes_61147
Expression_clusterWBPaper00064862:Ppa-sul-2(tu1069)_4M1_Down
WBPaper00041207:PP_dauer_down
MethodGene