WormBase Tree Display for Gene: WBGene00092927
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| WBGene00092927 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | Sequence_name | PPA03373 | |||||||
| Molecular_name | PPA03373 | ||||||||
| PPA03373.1 | |||||||||
| PP51472 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000059716 | ||||||||
| GENEPREDICTION_SNAP300000059717 | |||||||||
| UMA-S283-2.37 | Person_evidence | WBPerson606 | |||||||
| Public_name | PPA03373 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:03 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:48 | WBPerson4055 | Event | Acquires_merge | WBGene00092928 | ||||
| 3 | 20 Mar 2018 10:26:13 | WBPerson4025 | Name_change | CGC_name | Removed | ||||
| Acquires_merge | WBGene00092928 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| RNASeq_FPKM | WBls:0000032 | 41.6598 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 39.5131 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 41.6598 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 76.8794 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00174822 | ||||||||
| 00174823 | |||||||||
| 00174824 | |||||||||
| 00174825 | |||||||||
| 00174826 | |||||||||
| 00174827 | |||||||||
| Ortholog (47) | |||||||||
| Paralog (120) | |||||||||
| Structured_description | Automated_description | Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans acc-2 and hrg-2 and members of the C. elegans cdr gene class including cdr-1. In C. elegans, cdr-1 is involved in stress response to cadmium ion. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA03373 | |||||||
| Corresponding_transcript | PPA03373.1 | ||||||||
| Other_sequence | PPC00463_1 | ||||||||
| PP00323 | |||||||||
| CBC10468_1 | |||||||||
| GR12504 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_43961 | |||||||
| GPL14372_Probes_43963 | |||||||||
| GPL14372_Probes_43970 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Remark | [180319 gw3] The CGC name Ppa-acc-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson4025 | ||||||
| Method | Gene |
