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WormBase Tree Display for Gene: WBGene00088499

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Name Class

WBGene00088499SMapS_parentSequencecb25.fpc2220c
IdentityVersion2
NameCGC_nameCbr-mpst-7From_analysisInferred_from_orthology
Sequence_nameCBG27085
Molecular_nameCBG27085
CBG27085.1
CBP29335
Other_nameCBG_27085Accession_evidenceNDBHE600998
Public_nameCbr-mpst-7
DB_infoDatabaseNDBlocus_tagCBG_27085
SpeciesCaenorhabditis briggsae
HistoryVersion_change123 Jul 2008 11:20:50WBPerson1847EventImportednGASP new gene
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbr-mpst-7
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmpst
RNASeq_FPKMWBls:000000210.6703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
14.9053From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.3907From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
18.6549From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
12.6874From_analysisRNASeq.briggsae.WBls:0000002.control_mean
13.0305From_analysisRNASeq.briggsae.WBls:0000002.control_median
6.0337From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.694727From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
0.701075From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.707424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.467384From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.66976From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.89712From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1.12448From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.610502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.64985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
0.65983From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.742884From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000270.482805From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
20.5662From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.75047From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
7.93316From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.0988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
6.92463From_analysisRNASeq.briggsae.WBls:0000027.control_median
8.72457From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003542.8571From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003828.3142From_analysisRNASeq.briggsae.WBls:0000038.control_mean
31.1732From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
34.1624From_analysisRNASeq.briggsae.WBls:0000038.control_median
37.1516From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
40.4955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.4364From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000411.92807From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.98423From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2.20687From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.33524From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.4295From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.99916From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.03824From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2.23387From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.33024From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.60222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000631.88033From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.20432From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.47533From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
3.17398From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.49198From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.82466From_analysisRNASeq.briggsae.WBls:0000063.control_median
2.84466From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.04635From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010110.9569From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.17398From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.87481From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.14446From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (27)
ParalogWBGene00027189Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038927Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041643Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041645Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Rhodanese-like domain superfamily and Rhodanese-like domain. Is an ortholog of C. elegans mpst-7.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG27085
Corresponding_transcriptCBG27085.1
Other_sequence (17)
Experimental_infoExpr_patternExpr1053634
Microarray_resultsGPL14143_CBG27085_756-815_0.896_30_C
GPL14143_CBG27085_840-899_0.915_15_B
GPL14143_CBG27085_962-1021_0.942_1_A
MethodGene