WormBase Tree Display for Gene: WBGene00086558
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| WBGene00086558 | SMap | S_parent | Sequence | F12E12 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | Sequence_name | F12E12.12 | ||||||||
| Molecular_name | F12E12.12 | |||||||||
| Other_name | F12E12.b | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | |||||||||
| CELE_F12E12.12 | Accession_evidence | NDB | BX284602 | |||||||
| Public_name | F12E12.12 | |||||||||
| DB_info | Database | WormFlux | gene | WBGene00086558 | ||||||
| NDB | locus_tag | CELE_F12E12.12 | ||||||||
| NCBI | gene | 7040143 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 18 Jul 2008 16:13:54 | WBPerson1867 | Event | Created | ||||
| 2 | 21 Oct 2019 15:31:36 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Allele (106) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00128761 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
| WBGene00103819 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00106963 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00117152 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00113749 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00210998 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00120251 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00095818 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| WBGene00106956 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||||
| Paralog (20) | ||||||||||
| Structured_description | Automated_description | Enriched in several structures, including RIS; carbon dioxide sensory neurons; excretory system; male distal tip cell; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including skn-1; eat-2; and clk-1 based on tiling array; microarray; and RNA-seq studies. Is affected by six chemicals including tryptophan; Sodium Chloride; and Rifampin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F12E12.12:wp274 | ||||||||
| Corresponding_pseudogene | F12E12.12 | |||||||||
| Other_sequence (40) | ||||||||||
| Associated_feature | WBsf649976 | |||||||||
| WBsf987366 | ||||||||||
| Experimental_info | Expr_pattern | Expr1014148 | ||||||||
| Expr1148384 | ||||||||||
| Expr2002473 | ||||||||||
| Expr2020691 | ||||||||||
| Microarray_results | SMD_F12E12.B | |||||||||
| 175885_at | ||||||||||
| 175888_at | ||||||||||
| GPL14144_F12E12.12_598-657_0.943_1_A | ||||||||||
| GPL19516_CGZ0015736 | ||||||||||
| GPL21109_F12E12.12 | ||||||||||
| GPL8304_CE_WBGene00044811_B | ||||||||||
| Expression_cluster (63) | ||||||||||
| Map_info | Positive | Positive_clone | F12E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Interpolated_map_position | II | -6.21652 | ||||||||
| Method | Gene |
