WormBase Tree Display for Gene: WBGene00044068
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| WBGene00044068 | Evidence | Inferred_automatically | Gene name parsed from strain object: VC756 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK867 | ||||||
| Identity | Version | 5 | |||||||
| Name | CGC_name | syd-9 | Paper_evidence | WBPaper00027711 | |||||
| Sequence_name | ZK867.1 | ||||||||
| Molecular_name (18) | |||||||||
| Other_name | tag-239 | Person_evidence | WBPerson201 | ||||||
| ztf-10 | Person_evidence | WBPerson1997 | |||||||
| CELE_ZK867.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | syd-9 | ||||||||
| DB_info | Database | AceView | gene | XH845 | |||||
| WormQTL | gene | WBGene00044068 | |||||||
| WormFlux | gene | WBGene00044068 | |||||||
| NDB | locus_tag | CELE_ZK867.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00044068|UniProtKB=Q95PV6 | |||||||
| family | PTHR24409 | ||||||||
| NCBI | gene | 180985 | |||||||
| RefSeq | protein | NM_076812.7 | |||||||
| NM_001375059.1 | |||||||||
| NM_001392799.1 | |||||||||
| NM_001375061.2 | |||||||||
| NM_076813.8 | |||||||||
| SwissProt | UniProtAcc | A0A5E4M3Q4 | |||||||
| TREEFAM | TREEFAM_ID | TF315770 | |||||||
| UniProt_GCRP | UniProtAcc | A0A5E4M3Q4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 22 Dec 2004 16:59:41 | WBPerson2970 | Event | Created | |||
| 2 | 16 Jun 2006 16:28:50 | WBPerson2970 | Name_change | CGC_name | ztf-10 | ||||
| Other_name | tag-239 | ||||||||
| 3 | 09 Oct 2006 16:15:01 | WBPerson2970 | Name_change | Other_name | syd-9 | ||||
| 4 | 08 Nov 2006 16:37:11 | WBPerson1847 | Name_change | CGC_name | syd-9 | ||||
| Other_name | ztf-10 | ||||||||
| 5 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00022828 | ||||
| Acquires_merge | WBGene00022828 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | syd | ||||||||
| Allele (184) | |||||||||
| Strain | WBStrain00036039 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (18) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nuclear speck. Expressed in ASEL; ASER; muscle cell; nerve ring neurons; and neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK867.1b | |||||||
| ZK867.1c | |||||||||
| ZK867.1d | |||||||||
| ZK867.1e | |||||||||
| ZK867.1f | |||||||||
| Corresponding_CDS_history | ZK867.1a:wp272 | ||||||||
| Corresponding_transcript | ZK867.1b.1 | ||||||||
| ZK867.1b.2 | |||||||||
| ZK867.1b.3 | |||||||||
| ZK867.1b.4 | |||||||||
| ZK867.1c.1 | |||||||||
| ZK867.1d.1 | |||||||||
| ZK867.1e.1 | |||||||||
| ZK867.1f.1 | |||||||||
| Other_sequence (21) | |||||||||
| Associated_feature (28) | |||||||||
| Transcription_factor | WBTranscriptionFactor000497 | ||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern (14) | |||||||||
| Drives_construct | WBCnstr00000606 | ||||||||
| WBCnstr00012985 | |||||||||
| WBCnstr00014268 | |||||||||
| WBCnstr00014278 | |||||||||
| WBCnstr00014314 | |||||||||
| WBCnstr00014319 | |||||||||
| WBCnstr00014323 | |||||||||
| WBCnstr00014326 | |||||||||
| Construct_product | WBCnstr00016822 | ||||||||
| WBCnstr00016861 | |||||||||
| WBCnstr00021935 | |||||||||
| Antibody | WBAntibody00001114 | ||||||||
| WBAntibody00001115 | |||||||||
| Microarray_results (45) | |||||||||
| Expression_cluster (229) | |||||||||
| Interaction (63) | |||||||||
| Map_info | Map | X | Position | -1.79069 | Error | 0.002604 | |||
| Positive | Positive_clone | ZK867 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5572 | |||||||
| 5612 | |||||||||
| 5701 | |||||||||
| Pos_neg_data | 10764 | ||||||||
| 10765 | |||||||||
| 10766 | |||||||||
| 10767 | |||||||||
| Reference | WBPaper00027711 | ||||||||
| WBPaper00032847 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041549 | |||||||||
| WBPaper00061738 | |||||||||
| Remark | [061108 ar2] This gene originally had syd-9 as an Other_name and ztf-10 as CGC_name. These were swapped on the publication by Wang(2006) | ||||||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
| Method | Gene |
