WormBase Tree Display for Gene: WBGene00043050
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| WBGene00043050 | SMap | S_parent | Sequence | R07G3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | oig-4 | Person_evidence | WBPerson1826 | |||||
| WBPerson260 | |||||||||
| Sequence_name | R07G3.9 | ||||||||
| Molecular_name | R07G3.9 | ||||||||
| R07G3.9.1 | |||||||||
| CE37545 | |||||||||
| Other_name | CELE_R07G3.9 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | oig-4 | ||||||||
| DB_info | Database | AceView | gene | 2H905 | |||||
| WormFlux | gene | WBGene00043050 | |||||||
| NDB | locus_tag | CELE_R07G3.9 | |||||||
| NCBI | gene | 259448 | |||||||
| RefSeq | protein | NM_001027107.5 | |||||||
| SwissProt | UniProtAcc | Q5WRU0 | |||||||
| UniProt_GCRP | UniProtAcc | Q5WRU0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 10 Sep 2004 09:19:02 | WBPerson1867 | Event | Created | |||
| 2 | 15 Dec 2006 15:03:44 | WBPerson1847 | Name_change | CGC_name | oig-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | oig | ||||||||
| Allele (16) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00081495 | ||||||||
| 00081496 | |||||||||
| 00081497 | |||||||||
| 00081498 | |||||||||
| 00081499 | |||||||||
| 00081500 | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00003859 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | oig-4 encodes a protein containing a single immunoglobulin domain; OIG-4 is expressed by body wall muscle cells and secreted into the extracellular space where it interacts with, stabilizes, and properly localizes a complex containing levamisole-sensitive acetylcholine receptors (L-AChRs) and the LEV-9 and LEV-10 extracellular and transmembrane, respectively, scaffolding proteins; OIG-4 requires L-AChRs to localize to the synapse, but can partially localize to synaptic regions independently of LEV-9 and LEV-10, suggesting that it could play a role in linking local synaptic cues to clustering of the L-AChR complex; OIG-4 is also expressed in the pm6 pharyngeal muscle and four head neurons. | Paper_evidence | WBPaper00038066 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Mar 2011 00:00:00 | ||||||||
| Automated_description | Located in extracellular space and neuromuscular junction. Expressed in body wall musculature; neurons; pm6; and somatic nervous system. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R07G3.9 | |||||||
| Corresponding_transcript | R07G3.9.1 | ||||||||
| Other_sequence (22) | |||||||||
| Associated_feature | WBsf644395 | ||||||||
| WBsf988497 | |||||||||
| WBsf1012559 | |||||||||
| WBsf221617 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00017566 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00062333 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051504 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034725 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11209 | ||||||||
| Expr11210 | |||||||||
| Expr1014999 | |||||||||
| Expr1040143 | |||||||||
| Expr1155184 | |||||||||
| Expr2014621 | |||||||||
| Expr2032854 | |||||||||
| Drives_construct | WBCnstr00007787 | ||||||||
| WBCnstr00007821 | |||||||||
| WBCnstr00007824 | |||||||||
| WBCnstr00007825 | |||||||||
| WBCnstr00007827 | |||||||||
| WBCnstr00007829 | |||||||||
| WBCnstr00023838 | |||||||||
| Construct_product (11) | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (72) | |||||||||
| Interaction | WBInteraction000501249 | ||||||||
| WBInteraction000501250 | |||||||||
| WBInteraction000501251 | |||||||||
| WBInteraction000501252 | |||||||||
| WBInteraction000504744 | |||||||||
| WBInteraction000504745 | |||||||||
| WBInteraction000522416 | |||||||||
| Map_info | Map | II | Position | 0.5066 | |||||
| Positive | Positive_clone | R07G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00033477 | ||||||||
| WBPaper00037333 | |||||||||
| WBPaper00038066 | |||||||||
| WBPaper00039284 | |||||||||
| WBPaper00039295 | |||||||||
| WBPaper00043412 | |||||||||
| WBPaper00048067 | |||||||||
| WBPaper00064190 | |||||||||
| WBPaper00064302 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
