WormBase Tree Display for Gene: WBGene00042504

WBGene00042504 SMap: S_parent: Sequence: cb25.NA_147
  Identity: Version: 4
    Name: Sequence_name: CBG24378
      Molecular_name: CBG24378
        CBG24378.1
        CBP40967
      Other_name: CBG_24378 Accession_evidence: NDB HE601219
      Public_name: CBG24378
    DB_info: Database: NDB locus_tag CBG_24378
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:12 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 31 Aug 2016 10:30:13 WBPerson4025 Event: Split_into: WBGene00270587
        3 28 Sep 2016 16:00:53 WBPerson2970 Name_change: CGC_name: Cbr-irg-6
        4 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Removed
      Split_into: WBGene00270587
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000002 10.4128 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        18.4772 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        4.68435 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        8.07685 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        3.65674 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        6.3806 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        8.72379 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.057326 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.114651 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        0.185326 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0.441327 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0.162254 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.182697 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.20314 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        0.157698 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        0.22099 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.232812 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.419979 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.156036 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.520056 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        18.7629 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        6.47966 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        3.97443 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        6.71695 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        7.4288 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 1.92545 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 1.67747 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        23.5752 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        2.49397 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        2.97754 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        3.4611 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        7.80194 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 1.51619 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        4.11639 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        4.43469 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        5.04657 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        5.97674 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        6.12944 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.947895 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        1.25785 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        2.81629 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        3.32408 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
      WBls:0000063 3.56849 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        3.64561 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        3.98893 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        4.21576 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        4.47423 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        6.95238 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        2.9038 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        3.81727 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        4.21249 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 3.4611 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        5.2081 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        2.20971 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        4.43342 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (28)
    Paralog (21)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domain: CUB-like domain. Is an ortholog of C. elegans K08D8.4 and irg-6. In C. elegans, irg-6 is involved in response to gamma radiation. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG24378
    Corresponding_CDS_history: CBG24378:bp255
    Corresponding_transcript: CBG24378.1
    Other_sequence: CBC16493_1
      CBC09515_1
  Experimental_info: Expr_pattern: Expr1062789
    Microarray_results: GPL8303_CB6_WBGene00042504_A
      GPL8303_CB6_WBGene00042504_B
      GPL14143_CBG24378_2139-2198_0.930_4_C
      GPL14143_CBG24378_2277-2336_0.943_2_B
  Remark: [180319 gw3] The CGC name Cbr-irg-6 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson4025
  Method: Gene