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WormBase Tree Display for Gene: WBGene00042085

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Name Class

WBGene00042085SMapS_parentSequencecb25.NA_047
IdentityVersion2
NameSequence_nameCBG23827
Molecular_nameCBG23827
CBG23827.1
CBP24549
Other_nameCBG_23827Accession_evidenceNDBHE601104
Public_nameCBG23827
DB_infoDatabaseNDBlocus_tagCBG_23827
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:12WBPerson1971EventImportedInitial conversion from brigace
223 Apr 2018 15:09:26WBPerson4025EventSplit_intoWBGene00303134
Split_intoWBGene00303134
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:000000222.1453From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
39.5237From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
50.6935From_analysisRNASeq.briggsae.WBls:0000002.control_mean
90.4116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
60.3336From_analysisRNASeq.briggsae.WBls:0000002.control_mean
64.3888From_analysisRNASeq.briggsae.WBls:0000002.control_median
89.254From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.263071From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.526142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.458696From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.849946From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041.30743From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
1.88909From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
2.47076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.93785From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
2.21219From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
2.36246From_analysisRNASeq.briggsae.WBls:0000004.control_mean
3.88408From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000272.50034From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
30.2391From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.2734From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
80.9437From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
18.0203From_analysisRNASeq.briggsae.WBls:0000027.control_median
28.7671From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
29.8711From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003512.447From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812.1164From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.20006From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
29.6008From_analysisRNASeq.briggsae.WBls:0000038.control_mean
31.7234From_analysisRNASeq.briggsae.WBls:0000038.control_median
51.3304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
52.7564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004143.0925From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
44.0578From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
44.4164From_analysisRNASeq.briggsae.WBls:0000041.control_median
44.775From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
44.9194From_analysisRNASeq.briggsae.WBls:0000041.control_mean
47.7523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
46.2636From_analysisRNASeq.briggsae.WBls:0000041.control_median
50.0142From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
52.8828From_analysisRNASeq.briggsae.WBls:0000041.control_mean
87.6051From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006322.477From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
24.9385From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
25.7537From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
28.5646From_analysisRNASeq.briggsae.WBls:0000063.control_mean
30.1001From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
39.5539From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
27.9269From_analysisRNASeq.briggsae.WBls:0000063.control_median
29.3629From_analysisRNASeq.briggsae.WBls:0000063.control_mean
33.3539From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010124.9385From_analysisRNASeq.briggsae.total_over_all_stages.control_median
28.866From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
25.3461From_analysisRNASeq.briggsae.total_over_all_stages.control_median
29.8682From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (28)
ParalogWBGene00028585Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030797Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034009Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037681Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039519Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041354Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00271426Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: NADAR domain; NADAR; and YbiA-like superfamily. Is an ortholog of C. elegans C08E8.4. In C. elegans, C08E8.4 is involved in innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG23827
Corresponding_CDS_historyCBG23827:bp194
CBG23827:bp265
Corresponding_transcriptCBG23827.1
Other_sequenceMJC04360_1
CBC04557_1
DA03817
MJ00436
Experimental_infoExpr_patternExpr1066096
Microarray_resultsGPL8303_CB6_WBGene00042085_A
GPL14143_CBG23827_523-582_0.838_33_A
MethodGene