WormBase Tree Display for Gene: WBGene00037954

WBGene00037954 SMap: S_parent: Sequence: cb25.fpc4109
  Identity: Version: 5
    Name: CGC_name: Cbr-rab-11.2.1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG18559
      Molecular_name: CBG18559
        CBG18559.1
        CBP10918
      Other_name: CBG_18559 Accession_evidence: NDB HE601466
      Public_name: CBG18559
    DB_info: Database: NDB locus_tag CBG_18559
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:07 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Cbr-rab-11.2.1
        3 08 Feb 2019 15:42:28 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:28 WBPerson1983 Name_change: CGC_name: Cbr-rab-11.2.1
        5 04 Jun 2020 14:38:22 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cbr-rab-11.2.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rab
    RNASeq_FPKM: WBls:0000002 17.2874 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        19.0302 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        26.7231 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        43.8516 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        28.5401 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        29.5548 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        38.0499 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0.977201 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        1.8992 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        2.82119 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0.536633 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        1.44501 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 7.50289 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        7.60366 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        7.70443 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        11.3466 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        6.46567 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        7.93487 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        8.19089 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
      WBls:0000024 (12)
      WBls:0000027 12.1388 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        136.105 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        3.84599 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        50.6966 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        35.4963 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        52.7359 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        58.8537 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 15.2899 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 24.8215 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        40.1407 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        44.6513 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        55.4598 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        6.32369 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        92.0004 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 15.5723 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        18.5003 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        18.628 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        18.7557 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        26.4557 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        52.9945 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        21.2869 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        23.8181 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        28.032 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        38.5513 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        21.3805 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        24.9043 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        26.1757 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        26.1818 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        29.6405 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        19.441 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        25.54 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        9.74379 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 18.7557 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        26.8065 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        18.628 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        25.5971 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00141482
      00141483
    Contained_in_operon: CBOPA0952
    Ortholog (56)
    Paralog (31)
    Structured_description: Automated_description: Predicted to enable GTP binding activity and GTPase activity. Is an ortholog of C. elegans rab-11.2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG18559
    Corresponding_CDS_history: CBG18559:bp194
    Corresponding_transcript: CBG18559.1
    Other_sequence: Tcol_isotig17520
      HCC00626_2
      Acan_isotig12438
  Experimental_info: Expr_pattern: Expr1051138
    Microarray_results: GPL8303_CB6_WBGene00037954_A
      GPL14143_CBG18559_502-561_0.958_1_A
      GPL14143_CBG18559_587-646_0.955_3_B
  Remark: [190208 pad] The CGC name Cbr-rab-11.2.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [200603 pad] The CGC name Cbr-rab-11.2.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene