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WormBase Tree Display for Gene: WBGene00033556

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Name Class

WBGene00033556SMapS_parentSequencecb25.fpc2888a2
IdentityVersion3
NameCGC_nameCbr-nmtn-1From_analysisInferred_from_orthology
Sequence_nameCBG12638
Molecular_nameCBG12638
CBG12638.1
CBP46860
Other_nameCBG_12638Accession_evidenceNDBHE600940
CBG_12640
Public_nameCbr-nmtn-1
DB_infoDatabaseNDBlocus_tagCBG_12638
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
231 Aug 2016 10:29:43WBPerson4025EventAcquires_mergeWBGene00033558
320 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-nmtn-1
Acquires_mergeWBGene00033558
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnmtn
RNASeq_FPKMWBls:00000021.99912From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.19313From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.43622From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.11641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.37128From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.09612From_analysisRNASeq.briggsae.WBls:0000002.control_median
2.16999From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.467837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.0806From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.69336From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
1.13748From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.25123From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000411.4998From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
13.7544From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
9.24516From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
10.1419From_analysisRNASeq.briggsae.WBls:0000004.control_mean
9.03425From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
9.2115From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
9.46416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.342231From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.35748From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.73014From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.49072From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.17501From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.54574From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.99254From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000354.20057From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.291913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.72108From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.89803From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.95995From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.19882From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3.38032From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.31623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.359045From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.384184From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.409323From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.716032From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.77953From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.09443From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.13041From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.85666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
2.0617From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.519765From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.56608From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.759277From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.863766From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.914621From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.932152From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.766303From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.801435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.8326From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001011.72108From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.01201From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.81809From_analysisRNASeq.briggsae.total_over_all_stages.control_median
3.40508From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (39)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: WD domain, G-beta repeat; WD repeat-containing protein 47; CTLH, C-terminal LisH motif; WD40-repeat-containing domain superfamily; WD40/YVTN repeat-like-containing domain superfamily; and WD40 repeat. Is an ortholog of C. elegans nmtn-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG12638
Corresponding_CDS_historyCBG12638:bp219
CBG12638:bp255
Corresponding_transcriptCBG12638.1
Other_sequence (23)
Experimental_infoExpr_patternExpr1058038
Expr1066731
Microarray_resultsGPL8303_CB6_WBGene00033556_A
GPL8303_CB6_WBGene00033556_B
GPL8303_CB6_WBGene00033558_A
GPL8303_CB6_WBGene00033558_B
GPL14143_CBG12638_418-477_0.852_34_C
GPL14143_CBG12638_1480-1539_0.926_7_B
GPL14143_CBG12638_1788-1847_0.920_10_A
GPL14143_CBG12640_609-668_0.954_2_B
GPL14143_CBG12640_667-726_0.959_1_A
GPL14143_CBG12640_695-754_0.953_3_C
MethodGene