WormBase Tree Display for Gene: WBGene00030515

WBGene00030515 SMap: S_parent: Sequence: cb25.fpc2114
  Identity: Version: 2
    Name: CGC_name: Cbr-col-139 From_analysis: Inferred_from_orthology
      Sequence_name: CBG08781
      Molecular_name: CBG08781
        CBG08781.1
        CBP08060
      Other_name: CBG_08781 Accession_evidence: NDB HE601187
      Public_name: Cbr-col-139
    DB_info: Database: NDB locus_tag CBG_08781
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:00 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 15 Oct 2007 15:19:45 WBPerson2970 Name_change: CGC_name: Cbr-col-139
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    RNASeq_FPKM: WBls:0000002 169.452 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        91.9681 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        9.53365 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        96.9187 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        71.4469 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        84.1828 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        86.8378 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 0 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.047636 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.118177 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.120004 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 0.138104 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
        0.143256 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        0.159295 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        0.180486 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        0.254434 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        0.423138 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
        0.533847 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
      WBls:0000027 0.604857 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.798382 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.79029 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0.438149 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        0.521503 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        0.708324 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 0 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.65234 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        15.3639 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        6.16892 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        6.46339 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        6.75785 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        7.23575 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 1054.41 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        119.35 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        1394.73 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        1523.23 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        714.091 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        937.85 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        573.477 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        61.2347 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        643.784 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        731.019 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
      WBls:0000063 1041.18 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        1126.15 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        1153.29 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        1349.78 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        934.08 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1008.8 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        1083.67 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        946.533 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 1.79029 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        301.021 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        1.22132 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        274.875 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00133904
    Ortholog: WBGene00000712 Caenorhabditis elegans From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00100342 Pristionchus pacificus From_analysis: OMA
      WBGene00058024 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
      WBGene00128470 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CSP31.g9860 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g20763 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      Cni-col-139 Caenorhabditis nigoni From_analysis: WormBase-Compara
    Paralog (155)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Is an ortholog of C. elegans col-139. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG08781
    Corresponding_CDS_history: CBG08781:bp194
    Corresponding_transcript: CBG08781.1
    Other_sequence: GP02774
      BE720902.1
      CBC01802_1
      CJC00598_3
      BMC12194_1
      DN190877.1
      CGC01054_1
      BMC07190_1
      CGC01527_1
  Experimental_info: Expr_pattern: Expr1066997
    Microarray_results: GPL8303_CB6_WBGene00030515_A
      GPL8303_CB6_WBGene00030515_B
      GPL14143_CBG08781_832-891_0.876_14_A
  Method: Gene