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WormBase Tree Display for Gene: WBGene00030001

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Name Class

WBGene00030001SMapS_parentSequencecb25.fpc1402c
IdentityVersion2
NameCGC_nameCbr-mrp-1From_analysisInferred_from_orthology
Sequence_nameCBG08145
Molecular_nameCBG08145a
CBG08145a.1
CBP44750
CBG08145b
CBP42113
CBG08145b.1
Other_nameCBG_08145Accession_evidenceNDBHE600971
Public_nameCbr-mrp-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-mrp-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmrp
AlleleWBVar00113137
WBVar00113138
WBVar00136823
WBVar00113139
WBVar00113140
WBVar00113141
WBVar00113135
WBVar00113136
WBVar00013464
RNASeq_FPKMWBls:000000214.0105From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
15.8564From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
15.9141From_analysisRNASeq.briggsae.WBls:0000002.control_mean
17.8755From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
14.0718From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.9334From_analysisRNASeq.briggsae.WBls:0000002.control_median
8.54475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000032.36989From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.51203From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
4.65416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
3.54801From_analysisRNASeq.briggsae.WBls:0000003.control_mean
3.61997From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000426.1859From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
28.9656From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
31.7453From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
28.8147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
30.2359From_analysisRNASeq.briggsae.WBls:0000004.control_mean
31.9338From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
32.4996From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002711.7267From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.4218From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
28.8755From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.88266From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
13.1304From_analysisRNASeq.briggsae.WBls:0000027.control_median
14.1395From_analysisRNASeq.briggsae.WBls:0000027.control_mean
21.3781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003525.2669From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003819.2737From_analysisRNASeq.briggsae.WBls:0000038.control_mean
19.6333From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
21.3325From_analysisRNASeq.briggsae.WBls:0000038.control_median
23.0316From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
29.5681From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
4.86181From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004110.2269From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
7.94011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
8.91353From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
9.10227From_analysisRNASeq.briggsae.WBls:0000041.control_mean
9.12103From_analysisRNASeq.briggsae.WBls:0000041.control_median
9.32854From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
8.1888From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
9.01956From_analysisRNASeq.briggsae.WBls:0000041.control_mean
9.51951From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006310.7437From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
10.9041From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
12.7532From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
8.77387From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.46833From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
10.8239From_analysisRNASeq.briggsae.WBls:0000063.control_median
12.3299From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
9.36654From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010112.7532From_analysisRNASeq.briggsae.total_over_all_stages.control_median
14.9617From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
12.5415From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.5452From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00133407
00133408
00133409
00133410
00133411
00133412
Ortholog (39)
ParalogWBGene00030002Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00023874Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00025084Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029634Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030162Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030970Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034888Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036076Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041902Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042600Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ABC-type transporter activity; ATP binding activity; and ATP hydrolysis activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans mrp-1. In C. elegans, mrp-1 is involved in dauer larval development; regulatory ncRNA-mediated post-transcriptional gene silencing; and stress response to metal ion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08145a
CBG08145b
Corresponding_CDS_historyCBG08145:bp194
CBG08145:bp255
Corresponding_transcriptCBG08145a.1
CBG08145b.1
Other_sequence (31)
Experimental_infoExpr_patternExpr1050969
Microarray_resultsGPL8303_CB6_WBGene00030001_A
GPL8303_CB6_WBGene00030001_B
GPL8303_CB6_WBGene00030001_C
GPL8303_CB6_WBGene00030001_D
GPL8303_CB6_WBGene00030001_E
GPL14143_CBG08145_3873-3932_0.641_362_A
GPL14143_CBG08145_4656-4715_0.789_21_B
GPL14143_CBG08146_2314-2373_0.757_136_A
MethodGene