Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00029983

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00029983SMapS_parentSequencecb25.fpc1402c
IdentityVersion2
NameCGC_nameCbr-sli-1From_analysisInferred_from_orthology
Sequence_nameCBG08124
Molecular_nameCBG08124a
CBG08124a.1
CBP46374
CBG08124b
CBP39280
CBG08124b.1
Other_nameCBG_08124Accession_evidenceNDBHE600971
Public_nameCbr-sli-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-sli-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsli
Allele (33)
RNASeq_FPKMWBls:000000214.8764From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
19.9062From_analysisRNASeq.briggsae.WBls:0000002.control_mean
20.455From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
24.3871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
13.1782From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
17.6657From_analysisRNASeq.briggsae.WBls:0000002.control_median
18.2242From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000332.528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
40.158From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
47.7879From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
39.6432From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
39.9864From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000451.9335From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
55.7186From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
59.5037From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
53.224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
58.2134From_analysisRNASeq.briggsae.WBls:0000004.control_mean
58.225From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
68.1809From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.8905From_analysisRNASeq.briggsae.WBls:0000027.control_mean
26.283From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.70719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
6.6814From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.0538From_analysisRNASeq.briggsae.WBls:0000027.control_mean
16.4822From_analysisRNASeq.briggsae.WBls:0000027.control_median
28.5437From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003521.8006From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003816.0052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
17.3185From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.6318From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
19.0767From_analysisRNASeq.briggsae.WBls:0000038.control_mean
35.0399From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.63003From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004113.684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
14.2695From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
14.6184From_analysisRNASeq.briggsae.WBls:0000041.control_mean
14.703From_analysisRNASeq.briggsae.WBls:0000041.control_median
15.1366From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
15.3834From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
15.0122From_analysisRNASeq.briggsae.WBls:0000041.control_mean
15.0935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
15.1151From_analysisRNASeq.briggsae.WBls:0000041.control_median
16.5065From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.53234From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.26973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
6.55857From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
7.40255From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
7.43084From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
15.7103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
6.98056From_analysisRNASeq.briggsae.WBls:0000063.control_median
7.22866From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010116.0052From_analysisRNASeq.briggsae.total_over_all_stages.control_median
20.491From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
17.5692From_analysisRNASeq.briggsae.total_over_all_stages.control_median
23.7512From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00133392
00133393
00133394
00133395
Ortholog (29)
Structured_descriptionAutomated_descriptionPredicted to enable calcium ion binding activity and ubiquitin-protein transferase activity. Predicted to be involved in cell surface receptor signaling pathway and regulation of signaling. Is an ortholog of C. elegans sli-1. In C. elegans, sli-1 is involved in negative regulation of vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08124a
CBG08124b
Corresponding_CDS_historyCBG08124:bp194
CBG08124:bp255
Corresponding_transcriptCBG08124a.1
CBG08124b.1
Other_sequence (32)
Experimental_infoExpr_patternExpr1069476
Microarray_resultsGPL8303_CB6_WBGene00029983_A
GPL8303_CB6_WBGene00029983_B
GPL8303_CB6_WBGene00029983_C
GPL8303_CB6_WBGene00029983_D
GPL8303_CB6_WBGene00029983_E
GPL14143_CBG08124_888-947_0.772_33_C
GPL14143_CBG08124_1041-1100_0.810_3_B
GPL14143_CBG08124_1209-1268_0.805_4_A
MethodGene