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WormBase Tree Display for Gene: WBGene00029983

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Name Class

WBGene00029983SMapS_parentSequencecb25.fpc1402c
IdentityVersion2
NameCGC_nameCbr-sli-1From_analysisInferred_from_orthology
Sequence_nameCBG08124
Molecular_nameCBG08124a
CBG08124a.1
CBP46374
CBG08124b
CBP39280
CBG08124b.1
Other_nameCBG_08124Accession_evidenceNDBHE600971
Public_nameCbr-sli-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-sli-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsli
AlleleWBVar00113095
WBVar00113101
WBVar00113077
WBVar00113083
WBVar00113089
WBVar00113096
WBVar00042024
WBVar00113084
WBVar00113078
WBVar00113102
WBVar00113090
WBVar00113072
WBVar00113085
WBVar00113097
WBVar00113073
WBVar00113091
WBVar00113079
WBVar00113098
WBVar00113080
WBVar00113086
WBVar00113092
WBVar00113074
WBVar00042029
WBVar00113075
WBVar00113093
WBVar00113081
WBVar00113099
WBVar00113087
WBVar00113100
WBVar00113094
WBVar00113076
WBVar00113088
WBVar00113082
RNASeq_FPKMWBls:000000214.8764From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
19.9062From_analysisRNASeq.briggsae.WBls:0000002.control_mean
20.455From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
24.3871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
13.1782From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
17.6657From_analysisRNASeq.briggsae.WBls:0000002.control_median
18.2242From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000332.528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
40.158From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
47.7879From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
39.6432From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
39.9864From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000451.9335From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
55.7186From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
59.5037From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
53.224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
58.2134From_analysisRNASeq.briggsae.WBls:0000004.control_mean
58.225From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
68.1809From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:000002415.4566From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
17.69From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
24.0683From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
30.4486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
30.5952From_analysisRNASeq.briggsae.WBls:0000024.control_median
30.7134From_analysisRNASeq.briggsae.WBls:0000024.control_mean
30.7419From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
32.8265From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
37.5949From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
22.3445From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
29.1135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
29.745From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
WBls:000002711.8905From_analysisRNASeq.briggsae.WBls:0000027.control_mean
26.283From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.70719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
6.6814From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.0538From_analysisRNASeq.briggsae.WBls:0000027.control_mean
16.4822From_analysisRNASeq.briggsae.WBls:0000027.control_median
28.5437From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003521.8006From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003816.0052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
17.3185From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.6318From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
19.0767From_analysisRNASeq.briggsae.WBls:0000038.control_mean
35.0399From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.63003From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004113.684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
14.2695From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
14.6184From_analysisRNASeq.briggsae.WBls:0000041.control_mean
14.703From_analysisRNASeq.briggsae.WBls:0000041.control_median
15.1366From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
15.3834From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
15.0122From_analysisRNASeq.briggsae.WBls:0000041.control_mean
15.0935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
15.1151From_analysisRNASeq.briggsae.WBls:0000041.control_median
16.5065From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.53234From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.26973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
6.55857From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
7.40255From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
7.43084From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
15.7103From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
6.98056From_analysisRNASeq.briggsae.WBls:0000063.control_median
7.22866From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010116.0052From_analysisRNASeq.briggsae.total_over_all_stages.control_median
20.491From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
17.5692From_analysisRNASeq.briggsae.total_over_all_stages.control_median
23.7512From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00133392
00133393
00133394
00133395
OrthologWBGene00004829Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00060243Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00113114Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00192634Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00130322Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g3545Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2884Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1902Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13408Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP31.g11483Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16583Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g15651Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9808Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4243Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00309.g8969Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-sli-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15638Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01910.g23835Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03213Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_022194Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00991Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g22527Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0017900Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00225322Brugia malayiFrom_analysisWormBase-Compara
chrX_pilon.g18318Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242309Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00264480Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00266692Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291901Trichuris murisFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable calcium ion binding activity and ubiquitin-protein transferase activity. Predicted to be involved in cell surface receptor signaling pathway and regulation of signaling. Is an ortholog of C. elegans sli-1. In C. elegans, sli-1 is involved in negative regulation of vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08124a
CBG08124b
Corresponding_CDS_historyCBG08124:bp194
CBG08124:bp255
Corresponding_transcriptCBG08124a.1
CBG08124b.1
Other_sequenceTcol_isotig26815
JI168758.1
ES412865.1
FC552079.1
EY459620.1
CRC09607_1
FG581156.1
EX561860.1
ACC03027_1
EY469962.1
FC547842.1
Hbac_isotig00842
EX552128.1
Oden_isotig14929
FC546747.1
TSC00455_1
TS00859
HBC10784_1
Tcir_isotig22839
FC552040.1
ES273374.1
ES565456.1
FC545295.1
FC546963.1
CR07923
ES568496.1
Dviv_isotig23108
EX543792.1
Acan_isotig08455
Tcir_isotig24217
EX538415.1
CRC09499_1
Experimental_infoExpr_patternExpr1069476
Microarray_resultsGPL8303_CB6_WBGene00029983_A
GPL8303_CB6_WBGene00029983_B
GPL8303_CB6_WBGene00029983_C
GPL8303_CB6_WBGene00029983_D
GPL8303_CB6_WBGene00029983_E
GPL14143_CBG08124_888-947_0.772_33_C
GPL14143_CBG08124_1041-1100_0.810_3_B
GPL14143_CBG08124_1209-1268_0.805_4_A
MethodGene