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WormBase Tree Display for Gene: WBGene00029427

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Name Class

WBGene00029427SMapS_parentSequencecb25.fpc0829
IdentityVersion3
NameCGC_nameCbr-hlb-1From_analysisInferred_from_orthology
Sequence_nameCBG07358
Molecular_name (27)
Other_nameCBG_07358Accession_evidenceNDBHE601041
CBG_07357
Public_nameCbr-hlb-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
223 Apr 2010 14:43:28WBPerson2970Name_changeCGC_nameCbr-hlb-1
331 Aug 2016 10:29:45WBPerson4025EventAcquires_mergeWBGene00029426
Acquires_mergeWBGene00029426
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhlb
AlleleWBVar00112220
WBVar00016274
WBVar00112221
WBVar00007417
RNASeq_FPKMWBls:000000215.6405From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
17.4421From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
18.0099From_analysisRNASeq.briggsae.WBls:0000002.control_mean
20.9471From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
15.6611From_analysisRNASeq.briggsae.WBls:0000002.control_mean
16.5413From_analysisRNASeq.briggsae.WBls:0000002.control_median
8.61479From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000319.4934From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
21.6923From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
23.8912From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
19.7289From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
21.0378From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000461.0701From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
63.6174From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
66.1646From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
54.7079From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
61.5168From_analysisRNASeq.briggsae.WBls:0000004.control_mean
62.6907From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
62.9506From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002716.6271From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
20.5766From_analysisRNASeq.briggsae.WBls:0000027.control_mean
39.0837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.01913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
24.7261From_analysisRNASeq.briggsae.WBls:0000027.control_mean
26.9009From_analysisRNASeq.briggsae.WBls:0000027.control_median
37.1746From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003534.4346From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003818.3302From_analysisRNASeq.briggsae.WBls:0000038.control_mean
18.7706From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
19.341From_analysisRNASeq.briggsae.WBls:0000038.control_median
19.9113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
27.3499From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
7.28887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004111.6955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
4.64042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
4.70046From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
4.7901From_analysisRNASeq.briggsae.WBls:0000041.control_median
4.87975From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
6.47903From_analysisRNASeq.briggsae.WBls:0000041.control_mean
5.51971From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.15967From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
6.89544From_analysisRNASeq.briggsae.WBls:0000041.control_mean
9.29684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
6.3135From_analysisRNASeq.briggsae.WBls:0000063.control_mean
7.24173From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
7.86149From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
8.02145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
8.44285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
6.68125From_analysisRNASeq.briggsae.WBls:0000063.control_mean
7.94147From_analysisRNASeq.briggsae.WBls:0000063.control_median
8.52001From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010117.4421From_analysisRNASeq.briggsae.total_over_all_stages.control_median
19.041From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
18.1063From_analysisRNASeq.briggsae.total_over_all_stages.control_median
21.6325From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (31)
ParalogWBGene00027155Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Sterile alpha motif domain; Sterile alpha motif/pointed domain superfamily; LAR-interacting protein, Liprin; Liprin-beta; and SAM domain (Sterile alpha motif). Is an ortholog of C. elegans hlb-1. In C. elegans, hlb-1 is involved in several processes, including neuromuscular junction development; positive regulation of locomotion; and regulation of pharyngeal pumping.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07358a
CBG07358b
CBG07358c
CBG07358d
CBG07358e
CBG07358f
CBG07358g
CBG07358h
CBG07358i
Corresponding_CDS_historyCBG07358:bp255
Corresponding_transcriptCBG07358a.1
CBG07358b.1
CBG07358c.1
CBG07358d.1
CBG07358e.1
CBG07358f.1
CBG07358g.1
CBG07358h.1
CBG07358i.1
Other_sequence (54)
Experimental_infoExpr_patternExpr1052664
Expr1058684
Microarray_results (12)
MethodGene