WormBase Tree Display for Gene: WBGene00026296

WBGene00026296 SMap: S_parent: Sequence: cb25.fpc0063
  Identity: Version: 5
    Name: CGC_name: Cbr-dhs-31.1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG03429
      Molecular_name: CBG03429
        CBG03429.1
        CBP47489
      Other_name: CBG_03429 Accession_evidence: NDB HE601244
      Public_name: Cbr-dhs-31.1
    DB_info: Database: NDB locus_tag CBG_03429
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:55 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Oct 2016 12:01:30 WBPerson4025 Event: Split_into: WBGene00271432
        3 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Cbr-dhs-31.1
        4 08 Feb 2019 15:42:28 WBPerson1983 Name_change: CGC_name: Removed
        5 08 May 2019 10:09:28 WBPerson1983 Name_change: CGC_name: Cbr-dhs-31.1
        6 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        7 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cbr-dhs-31.1
      Split_into: WBGene00271432
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: dhs
    RNASeq_FPKM: WBls:0000002 12.7971 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        21.9629 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        8.00955 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        8.41882 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        11.1905 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        6.3707 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        8.21418 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 0.687477 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        1.18542 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        1.68336 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        1.96327 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        3.51898 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 3.3876 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        3.82783 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        4.26806 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        3.86253 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        4.62143 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        4.77342 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        7.72748 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.199642 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.471706 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        11.8936 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        4.18832 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        12.4102 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        6.18265 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        6.24379 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 12.7431 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 11.5325 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        12.7784 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        13.8979 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        2.05464 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        25.994 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        9.1672 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 10.2202 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        11.0941 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        15.9901 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        6.10576 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        7.69068 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        9.39239 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        10.1277 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        10.6109 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        12.7623 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        25.5657 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 10.1339 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        11.7147 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        12.9619 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        21.3543 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        6.87373 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        7.24989 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        11.5479 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        12.4337 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        16.0282 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 8.41882 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        9.23908 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        8.21418 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        9.42543 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (56)
    Paralog (20)
    Structured_description: Automated_description: Is affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Short-chain dehydrogenase/reductase SDR; short chain dehydrogenase; and NAD(P)-binding domain superfamily. Is an ortholog of C. elegans dhs-31. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG03429
    Corresponding_CDS_history: CBG03429:bp256
    Corresponding_transcript: CBG03429.1
    Other_sequence: FD514070.1
      GO251012.1
      CSC02133_1
  Experimental_info: Expr_pattern: Expr1066232
    Microarray_results: GPL14143_CBG03429_579-638_0.922_7_A
      GPL14143_CBG03429_874-933_0.918_10_C
      GPL14143_CBG03429_937-996_0.948_3_B
    Expression_cluster: WBPaper00059178:Cbr-spr-4(gu163)_downregulated
  Remark: [190208 pad] The CGC name Cbr-dhs-31.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cbr-dhs-31.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene