WormBase Tree Display for Gene: WBGene00022855
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| WBGene00022855 | SMap | S_parent | Sequence | ZK1127 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | tcer-1 | Person_evidence | WBPerson2819 | |||||
| WBPerson1157 | |||||||||
| Sequence_name | ZK1127.9 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | gos-1 | Person_evidence | WBPerson2819 | ||||||
| CELE_ZK1127.9 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | tcer-1 | ||||||||
| DB_info | Database | AceView | gene | 2H336C | |||||
| 2H336 | |||||||||
| WormQTL | gene | WBGene00022855 | |||||||
| WormFlux | gene | WBGene00022855 | |||||||
| NDB | locus_tag | CELE_ZK1127.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022855|UniProtKB=Q95PX7 | |||||||
| family | PTHR15377 | ||||||||
| NCBI | gene | 174150 | |||||||
| RefSeq | protein | NM_001393112.1 | |||||||
| NM_001381486.2 | |||||||||
| NM_001393111.1 | |||||||||
| NM_001383878.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF317748 | |||||||
| TrEMBL | UniProtAcc | Q95PX9 | |||||||
| Q86MN9 | |||||||||
| Q95PX8 | |||||||||
| Q95PX7 | |||||||||
| UniProt_GCRP | UniProtAcc | Q95PX7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:06 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 01 Sep 2009 13:39:27 | WBPerson9133 | Name_change | CGC_name | tcer-1 | ||||
| 3 | 09 Oct 2017 09:36:16 | WBPerson2970 | Name_change | Other_name | gos-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tcer | ||||||||
| Allele (47) | |||||||||
| Strain | WBStrain00004897 | ||||||||
| WBStrain00004899 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00083443 | ||||||||
| 00083444 | |||||||||
| 00083445 | |||||||||
| 00087975 | |||||||||
| 00087976 | |||||||||
| 00126826 | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00022853 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase binding activity and transcription coregulator activity. Predicted to be involved in regulation of DNA-templated transcription. Located in nuclear periphery. Expressed in several structures, including germ cell; gonad; hypodermal cell; intestinal cell; and somatic cell. Is an ortholog of human TCERG1 (transcription elongation regulator 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK1127.9a | |||||||
| ZK1127.9b | |||||||||
| ZK1127.9c | |||||||||
| ZK1127.9d | |||||||||
| Corresponding_CDS_history | ZK1127.9e:wp274 | ||||||||
| Corresponding_transcript | ZK1127.9a.1 | ||||||||
| ZK1127.9b.1 | |||||||||
| ZK1127.9c.1 | |||||||||
| ZK1127.9c.2 | |||||||||
| ZK1127.9c.3 | |||||||||
| ZK1127.9c.4 | |||||||||
| ZK1127.9d.1 | |||||||||
| Other_sequence (61) | |||||||||
| Associated_feature | WBsf650203 | ||||||||
| WBsf223279 | |||||||||
| Experimental_info | RNAi_result (33) | ||||||||
| Expr_pattern | Expr7190 | ||||||||
| Expr10747 | |||||||||
| Expr12818 | |||||||||
| Expr1040111 | |||||||||
| Expr1162561 | |||||||||
| Expr2017362 | |||||||||
| Expr2035499 | |||||||||
| Drives_construct (11) | |||||||||
| Construct_product (12) | |||||||||
| Regulate_expr_cluster | WBPaper00049217:TCER-1_downregulated | ||||||||
| WBPaper00049217:TCER-1_upregulated | |||||||||
| Antibody | WBAntibody00001520 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (92) | |||||||||
| Interaction (40) | |||||||||
| Map_info | Map | II | Position | 0.349925 | Error | 0.00503 | |||
| Positive | Positive_clone | ZK1127 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006089 | ||||||||
| WBPaper00011661 | |||||||||
| WBPaper00017696 | |||||||||
| WBPaper00035189 | |||||||||
| WBPaper00036067 | |||||||||
| WBPaper00036730 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040412 | |||||||||
| WBPaper00042071 | |||||||||
| WBPaper00042471 | |||||||||
| WBPaper00042563 | |||||||||
| WBPaper00043043 | |||||||||
| WBPaper00045571 | |||||||||
| WBPaper00047532 | |||||||||
| WBPaper00047536 | |||||||||
| WBPaper00049217 | |||||||||
| WBPaper00052832 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057058 | |||||||||
| WBPaper00057423 | |||||||||
| WBPaper00060837 | |||||||||
| WBPaper00061804 | |||||||||
| WBPaper00061938 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00062767 | |||||||||
| WBPaper00062779 | |||||||||
| WBPaper00062839 | |||||||||
| WBPaper00062988 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
