WormBase Tree Display for Gene: WBGene00022837
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| WBGene00022837 | SMap | S_parent | Sequence | ZK993 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ceh-45 | Person_evidence | WBPerson83 | |||||
| Sequence_name | ZK993.1 | ||||||||
| Molecular_name | ZK993.1a | ||||||||
| ZK993.1a.1 | |||||||||
| CE23489 | |||||||||
| ZK993.1b | |||||||||
| CE49173 | |||||||||
| ZK993.1b.1 | |||||||||
| Other_name | CELE_ZK993.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ceh-45 | ||||||||
| DB_info | Database | AceView | gene | 1B603 | |||||
| WormQTL | gene | WBGene00022837 | |||||||
| WormFlux | gene | WBGene00022837 | |||||||
| NDB | locus_tag | CELE_ZK993.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022837|UniProtKB=Q9N4L2 | |||||||
| family | PTHR24329 | ||||||||
| NCBI | gene | 171689 | |||||||
| RefSeq | protein | NM_058422.7 | |||||||
| NM_001306270.3 | |||||||||
| TrEMBL | UniProtAcc | V6CJ20 | |||||||
| Q9N4L2 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9N4L2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:06 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | ceh-45 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (143) | |||||||||
| Strain | WBStrain00036961 | ||||||||
| WBStrain00049305 | |||||||||
| WBStrain00051027 | |||||||||
| WBStrain00052006 | |||||||||
| WBStrain00055006 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00094703 | ||||||||
| 00094704 | |||||||||
| 00094705 | |||||||||
| 00094706 | |||||||||
| 00094707 | |||||||||
| 00094708 | |||||||||
| 00094709 | |||||||||
| 00094710 | |||||||||
| 00094711 | |||||||||
| 00126813 | |||||||||
| Ortholog (33) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | ceh-45 encodes a homeodomain-containing protein; loss of ceh-45 activity via large-scale RNAi results in variable embryonic lethality. | Paper_evidence | WBPaper00004402 | |||||
| WBPaper00025054 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 15 Feb 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in I1L; I1R; MI neuron; pharynx; and spermatheca. Is an ortholog of human GSC (goosecoid homeobox). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK993.1a | |||||||
| ZK993.1b | |||||||||
| Corresponding_transcript | ZK993.1a.1 | ||||||||
| ZK993.1b.1 | |||||||||
| Other_sequence | JI213731.1 | ||||||||
| Acan_isotig06709 | |||||||||
| Dviv_isotig15135 | |||||||||
| JI171277.1 | |||||||||
| Dviv_isotig15134 | |||||||||
| Tcir_isotig08758 | |||||||||
| Oden_isotig24330 | |||||||||
| CJC09711_1 | |||||||||
| Acan_isotig06710 | |||||||||
| Associated_feature | WBsf643042 | ||||||||
| WBsf978915 | |||||||||
| WBsf982665 | |||||||||
| WBsf982666 | |||||||||
| WBsf982667 | |||||||||
| WBsf1009193 | |||||||||
| WBsf1009194 | |||||||||
| WBsf1009195 | |||||||||
| WBsf217189 | |||||||||
| Transcription_factor | WBTranscriptionFactor000761 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00059878 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00117132 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004963 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004962 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7765 | ||||||||
| Expr15590 | |||||||||
| Expr1013498 | |||||||||
| Expr1040104 | |||||||||
| Expr1163301 | |||||||||
| Expr1170080 | |||||||||
| Expr2009888 | |||||||||
| Expr2028128 | |||||||||
| Drives_construct | WBCnstr00012910 | ||||||||
| WBCnstr00023931 | |||||||||
| WBCnstr00042412 | |||||||||
| WBCnstr00042465 | |||||||||
| Construct_product | WBCnstr00023931 | ||||||||
| WBCnstr00042412 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction (64) | |||||||||
| Map_info | Map | I | Position | -16.9417 | Error | 0.006531 | |||
| Positive | Positive_clone | ZK993 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5345 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027395 | ||||||||
| WBPaper00027861 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060123 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
