WormBase Tree Display for Gene: WBGene00022505
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| WBGene00022505 | SMap | S_parent | Sequence | ZC21 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | idpp-15 | Person_evidence | WBPerson1820 | |||||
| Sequence_name | ZC21.3 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_ZC21.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | idpp-15 | ||||||||
| DB_info | Database | AceView | gene | 3J617 | |||||
| WormQTL | gene | WBGene00022505 | |||||||
| WormFlux | gene | WBGene00022505 | |||||||
| NDB | locus_tag | CELE_ZC21.3 | |||||||
| NCBI | gene | 191053 | |||||||
| RefSeq | protein | NM_001379833.1 | |||||||
| NM_001306746.3 | |||||||||
| NM_001306747.2 | |||||||||
| NM_001306745.3 | |||||||||
| NM_001379834.1 | |||||||||
| SwissProt | UniProtAcc | P34587 | |||||||
| TREEFAM | TREEFAM_ID | TF343101 | |||||||
| TrEMBL | UniProtAcc | U4PBK5 | |||||||
| G4RUC0 | |||||||||
| U4PBY4 | |||||||||
| U4PME0 | |||||||||
| UniProt_GCRP | UniProtAcc | P34587 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Sep 2013 14:28:38 | WBPerson1983 | Event | Acquires_merge | WBGene00044351 | ||||
| 3 | 04 Jan 2022 10:41:14 | WBPerson1983 | Name_change | CGC_name | idpp-15 | ||||
| Acquires_merge | WBGene00044351 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | idpp | ||||||||
| Allele (36) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (18) | |||||||||
| Structured_description | Concise_description | ZC21.3 encodes a protein predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABplppppaa; ABprppppaa; AUA; accessory cell; and head mesodermal cell based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on RNA-seq; tiling array; and microarray studies. Is affected by nineteen chemicals including Ethanol; 1-methylnicotinamide; and nicotinic acid based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC21.3a | |||||||
| ZC21.3b | |||||||||
| ZC21.3c | |||||||||
| ZC21.3d | |||||||||
| ZC21.3e | |||||||||
| Corresponding_CDS_history | ZC21.3:wp101 | ||||||||
| ZC21.3:wp186 | |||||||||
| ZC21.3a:wp275 | |||||||||
| ZC21.3b:wp275 | |||||||||
| Corresponding_transcript | ZC21.3a.1 | ||||||||
| ZC21.3b.1 | |||||||||
| ZC21.3c.1 | |||||||||
| ZC21.3d.1 | |||||||||
| ZC21.3e.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf645420 | ||||||||
| WBsf993388 | |||||||||
| WBsf1015448 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058795 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021619 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005225 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037987 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr67 | ||||||||
| Expr1026616 | |||||||||
| Expr1028105 | |||||||||
| Expr1039948 | |||||||||
| Expr1040236 | |||||||||
| Expr1162218 | |||||||||
| Expr1162221 | |||||||||
| Expr2008576 | |||||||||
| Expr2026815 | |||||||||
| Drives_construct | WBCnstr00023615 | ||||||||
| WBCnstr00024195 | |||||||||
| Construct_product | WBCnstr00023615 | ||||||||
| WBCnstr00024195 | |||||||||
| Microarray_results | SMD_ZC21.3 | ||||||||
| 189769_at | |||||||||
| A_12_P105691 | |||||||||
| A_12_P145425 | |||||||||
| A_12_P145426 | |||||||||
| A_12_P145427 | |||||||||
| A_12_P145428 | |||||||||
| A_12_P177659 | |||||||||
| Aff_ZC21.3 | |||||||||
| GPL13394_WBGene00044351 | |||||||||
| GPL13914_ZC21.9 | |||||||||
| GPL14144_ZC21.3b_1104-1163_0.942_5_B | |||||||||
| GPL14144_ZC21.3b_1224-1283_0.975_1_A | |||||||||
| GPL14144_ZC21.3b_770-829_0.929_6_C | |||||||||
| GPL14144_ZC21.9_190-249_0.947_2_A | |||||||||
| GPL14144_ZC21.9_265-324_0.907_13_B | |||||||||
| GPL14144_ZC21.9_57-116_0.921_8_C | |||||||||
| GPL19516_CGZ0013372 | |||||||||
| GPL19516_CGZ0055651 | |||||||||
| GPL19516_CGZ0055652 | |||||||||
| GPL19516_CGZ0055653 | |||||||||
| GPL19516_CGZ0055654 | |||||||||
| GPL19516_CGZ0055655 | |||||||||
| GPL21109_Cat_ZC21.3a | |||||||||
| GPL21109_ZC21.3a | |||||||||
| GPL21109_ZC21.3c | |||||||||
| GPL3518_CE25660 | |||||||||
| GPL8304_CE_WBGene00022505_A | |||||||||
| GPL8304_CE_WBGene00022505_B | |||||||||
| GPL8304_CE_WBGene00044351_A | |||||||||
| GPL8304_CE_WBGene00044351_B | |||||||||
| GPL8673_ZC21_3P00390 | |||||||||
| GPL8673_ZC21_3P00567 | |||||||||
| GPL8673_ZC21_3P00864 | |||||||||
| GPL8673_ZC21_9P00249 | |||||||||
| GPL8673_ZC21_9P00560 | |||||||||
| GPL9450_ZC21.3 | |||||||||
| cea2.p.81273 | |||||||||
| Expression_cluster (215) | |||||||||
| Map_info | Map | III | Position | -0.2542 | |||||
| Positive | Positive_clone | ZC21 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00064648 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
