Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00022500

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00022500EvidencePaper_evidenceWBPaper00013452
SMapS_parentSequenceZC8
IdentityVersion2
NameCGC_namelfi-1Person_evidenceWBPerson732
Sequence_nameZC8.4
Molecular_name (21)
Other_nameCELE_ZC8.4Accession_evidenceNDBBX284606
Public_namelfi-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
204 Jun 2004 10:29:58WBPerson1971Name_changeCGC_namelfi-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlfi
Allele (252)
StrainWBStrain00032313
RNASeq_FPKM (74)
GO_annotation00023076
00023077
OrthologWBGene00051757Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00035028Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00115299Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00135020Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00227595Brugia malayiFrom_analysisWormBase-Compara
WBGene00231888Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g11878Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g13925Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6992Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19040Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15551Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g1821Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8369Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g17407Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g23356Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19140Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00028.g1662Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13617.g24300Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_18755.g26047Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_21077.g26593Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_21554.g26691Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lfi-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold409.g992Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13264Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00018.g1130Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00586Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024342Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00632Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g20473Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0247800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18993Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247053Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00266407Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0039152Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
Panther
ZFIN:ZDB-GENE-131121-625Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
Panther
HGNC:21299Homo sapiensFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
HGNC:1859Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
Panther
HGNC:51677Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
Panther
MGI:108084Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
Panther
MGI:3529431Mus musculusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:3045962Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoFinder
Panther
RGD:1562262Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
Panther
RGD:1305364Rattus norvegicusFrom_analysisInparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ParalogWBGene00018051Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionlfi-1 encodes, by alternative splicing, at least four isoforms of alarge coiled-coil protein paralogous to F35D11.11, and possiblyorthologous to rootletin (the structural protein comprising ciliaryrootlets); LFI-1 is also homologous to the Parascaris univalens MitoticAntigen, PUMA1; LFI-1 was initially identified in yeast two-hybrid screens for proteins that interact with the coiled-coil protein LIN-5, which is essential for proper spindle positioning and chromosome segregation; antibody staining reveals that, in embryos, LFI-1 is expressed in metaphase cells in a diffuse area surrounding the kinetochore microtubules and overlapping with LIN-5 localization; in interphase cells, LFI-1 localizes to the nucleus and remains in the nuclear region even after nuclear envelope breakdown; as loss of lfi-1 activity, or the combined activities of lfi-1 and a related gene, F35D11.11, by RNAi results in no obvious defects, the precise role of LFI-1 in development is not yet known.Paper_evidenceWBPaper00024244
WBPaper00029004
WBPaper00029016
Curator_confirmedWBPerson1843
Date_last_updated07 Feb 2007 00:00:00
Automated_descriptionLocated in kinetochore microtubule and nucleus. Is an ortholog of human CROCC (ciliary rootlet coiled-coil, rootletin).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelEFO:0009151Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:1859)
Molecular_infoCorresponding_CDSZC8.4a
ZC8.4d
ZC8.4e
ZC8.4f
ZC8.4g
ZC8.4h
Corresponding_CDS_historyZC8.4b:wp145
ZC8.4b:wp272
ZC8.4c:wp145
ZC8.4d:wp272
ZC8.4e:wp272
Corresponding_transcriptZC8.4a.1
ZC8.4a.2
ZC8.4a.3
ZC8.4a.4
ZC8.4d.1
ZC8.4e.1
ZC8.4f.1
ZC8.4g.1
ZC8.4h.1
Other_sequence (219)
Associated_featureWBsf648060
WBsf648061
WBsf978486
WBsf1005147
WBsf1005148
WBsf1022896
WBsf235646
WBsf235647
WBsf235648
Transcription_factorWBTranscriptionFactor000405
Experimental_infoRNAi_resultWBRNAi00021759Inferred_automaticallyRNAi_primary
WBRNAi00002294Inferred_automaticallyRNAi_primary
WBRNAi00062893Inferred_automaticallyRNAi_primary
WBRNAi00038104Inferred_automaticallyRNAi_primary
WBRNAi00059021Inferred_automaticallyRNAi_primary
WBRNAi00017162Inferred_automaticallyRNAi_primary
WBRNAi00070889Inferred_automaticallyRNAi_primary
WBRNAi00034411Inferred_automaticallyRNAi_primary
WBRNAi00062898Inferred_automaticallyRNAi_primary
WBRNAi00070888Inferred_automaticallyRNAi_primary
Expr_patternExpr2936
Expr1013576
Expr1039943
Expr1162452
Expr2013090
Expr2031322
Drives_constructWBCnstr00024200
Construct_productWBCnstr00024200
WBCnstr00038856
AntibodyWBAntibody00000895
WBAntibody00001192
Microarray_results (48)
Expression_cluster (263)
Interaction (51)
Map_infoMapXPosition-6.19862Error0.000328
PositivePositive_cloneZC8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00010599
WBPaper00018632
WBPaper00023417
WBPaper00024244
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene