WormBase Tree Display for Gene: WBGene00022499
expand all nodes | collapse all nodes | view schema
| WBGene00022499 | SMap | S_parent | Sequence | ZC8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-30 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | ZC8.3 | ||||||||
| Molecular_name | ZC8.3 | ||||||||
| ZC8.3.1 | |||||||||
| CE33744 | |||||||||
| Other_name | tag-226 | Person_evidence | WBPerson201 | ||||||
| CELE_ZC8.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | set-30 | ||||||||
| DB_info | Database | AceView | gene | XF621 | |||||
| WormQTL | gene | WBGene00022499 | |||||||
| WormFlux | gene | WBGene00022499 | |||||||
| NDB | locus_tag | CELE_ZC8.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022499|UniProtKB=Q23084 | |||||||
| family | PTHR12197 | ||||||||
| NCBI | gene | 180772 | |||||||
| RefSeq | protein | NM_076449.6 | |||||||
| TREEFAM | TREEFAM_ID | TF106487 | |||||||
| TrEMBL | UniProtAcc | Q23084 | |||||||
| UniProt_GCRP | UniProtAcc | Q23084 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-30 | ||||
| Other_name | tag-226 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele | WBVar01830448 | ||||||||
| WBVar01144427 | |||||||||
| WBVar01144428 | |||||||||
| WBVar01144429 | |||||||||
| WBVar01144430 | |||||||||
| WBVar01144431 | |||||||||
| WBVar01144432 | |||||||||
| WBVar01144433 | |||||||||
| WBVar01144434 | |||||||||
| WBVar01144435 | |||||||||
| WBVar01144436 | |||||||||
| WBVar01144437 | |||||||||
| WBVar01144438 | |||||||||
| WBVar01144439 | |||||||||
| WBVar01144440 | |||||||||
| WBVar01144441 | |||||||||
| WBVar01144442 | |||||||||
| WBVar01144443 | |||||||||
| WBVar01144444 | |||||||||
| WBVar01144445 | |||||||||
| WBVar01144446 | |||||||||
| WBVar01144447 | |||||||||
| WBVar01144448 | |||||||||
| WBVar01144449 | |||||||||
| WBVar01144450 | |||||||||
| WBVar01144451 | |||||||||
| WBVar01144452 | |||||||||
| WBVar01144453 | |||||||||
| WBVar01144454 | |||||||||
| WBVar01144455 | |||||||||
| WBVar00078473 | |||||||||
| WBVar01144456 | |||||||||
| WBVar00078474 | |||||||||
| WBVar01144457 | |||||||||
| WBVar00078475 | |||||||||
| WBVar00078476 | |||||||||
| WBVar01601713 | |||||||||
| WBVar01819779 | |||||||||
| WBVar01819780 | |||||||||
| WBVar00145722 | |||||||||
| WBVar00502714 | |||||||||
| WBVar00502715 | |||||||||
| WBVar00502716 | |||||||||
| WBVar00502717 | |||||||||
| WBVar00502718 | |||||||||
| WBVar00502719 | |||||||||
| WBVar00502720 | |||||||||
| WBVar00502721 | |||||||||
| WBVar00502722 | |||||||||
| WBVar00502723 | |||||||||
| WBVar01878598 | |||||||||
| WBVar01878599 | |||||||||
| WBVar01878600 | |||||||||
| WBVar01878601 | |||||||||
| WBVar01878602 | |||||||||
| WBVar01878603 | |||||||||
| WBVar02063651 | |||||||||
| WBVar02063652 | |||||||||
| WBVar02063653 | |||||||||
| WBVar01549563 | |||||||||
| WBVar01549564 | |||||||||
| WBVar01980611 | |||||||||
| WBVar01758219 | |||||||||
| WBVar01758220 | |||||||||
| WBVar01500067 | |||||||||
| Strain | WBStrain00036009 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00077222 | ||||||||
| 00077223 | |||||||||
| 00077224 | |||||||||
| 00077225 | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00009370 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011068 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00044070 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00007403 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | set-30 encodes a divergent ortholog of human SMYD1 (OMIM:606846), SMYD2 (OMIM:610663), and SYMD3 (OMIM:608783); SET-30 is paralogous to SET-10, SET-14, and SET-18; neither set-30(gk314) nor set-30(RNAi) have any obvious phenotypes. | Paper_evidence | WBPaper00030864 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 08 Oct 2007 00:00:00 | ||||||||
| Automated_description | Enables histone H3K4 methyltransferase activity. Predicted to be involved in chromatin remodeling. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC8.3 | |||||||
| Corresponding_CDS_history | ZC8.3:wp97 | ||||||||
| Corresponding_transcript | ZC8.3.1 | ||||||||
| Other_sequence | BMC06420_1 | ||||||||
| CJC13357_1 | |||||||||
| JI465669.1 | |||||||||
| JI464167.1 | |||||||||
| Associated_feature | WBsf648062 | ||||||||
| WBsf1005149 | |||||||||
| WBsf1005150 | |||||||||
| WBsf1022897 | |||||||||
| WBsf235649 | |||||||||
| WBsf235650 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00059019 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091495 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021757 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038103 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113460 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059020 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021758 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14377 | ||||||||
| Expr1023927 | |||||||||
| Expr1039942 | |||||||||
| Expr1162451 | |||||||||
| Expr2015775 | |||||||||
| Expr2034008 | |||||||||
| Drives_construct | WBCnstr00024201 | ||||||||
| Construct_product | WBCnstr00024201 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (188) | |||||||||
| Interaction | WBInteraction000521297 | ||||||||
| WBInteraction000521430 | |||||||||
| WBInteraction000521432 | |||||||||
| WBInteraction000560966 | |||||||||
| Map_info | Map | X | Position | -6.19835 | Error | 0.000307 | |||
| Positive | Positive_clone | ZC8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4925 | |||||||
| 5406 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
