WormBase Tree Display for Gene: WBGene00022483
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| WBGene00022483 | SMap | S_parent | Sequence | Y119D3B | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | srz-8 | Person_evidence | WBPerson522 | ||||||
| Sequence_name | Y119D3B.5 | |||||||||
| Molecular_name | Y119D3B.5 | |||||||||
| Other_name | CELE_Y119D3B.5 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | srz-8 | |||||||||
| DB_info | Database | AceView | gene | 3C345 | ||||||
| WormFlux | gene | WBGene00022483 | ||||||||
| NDB | locus_tag | CELE_Y119D3B.5 | ||||||||
| NCBI | gene | 191039 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 31 Aug 2004 10:04:31 | WBPerson1971 | Name_change | CGC_name | srz-8 | |||||
| 3 | 20 Jan 2020 12:22:56 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | srz | |||||||||
| Allele (32) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00142470 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00056570 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00081520 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00083205 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| Paralog (65) | ||||||||||
| Structured_description | Automated_description | Is affected by several genes including pry-1; etr-1; and tatn-1 based on tiling array and RNA-seq studies. Is affected by Sirolimus based on microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | Y119D3B.5:wp129 | ||||||||
| Y119D3B.5:wp275 | ||||||||||
| Corresponding_pseudogene | Y119D3B.5 | |||||||||
| Associated_feature | WBsf1014205 | |||||||||
| Experimental_info | Expr_pattern | Expr1159024 | ||||||||
| Drives_construct | WBCnstr00024210 | |||||||||
| Construct_product | WBCnstr00024210 | |||||||||
| Microarray_results (21) | ||||||||||
| Expression_cluster | WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray | |||||||||
| WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray | ||||||||||
| WBPaper00044656:tatn-1(qd182)_upregulated | ||||||||||
| WBPaper00045420:fertilization_downregulated_transcript | ||||||||||
| WBPaper00055626:pry-1(mu38)_upregulated | ||||||||||
| WBPaper00061527:srj-21-srh-32 | ||||||||||
| WBPaper00062325:muscle_depleted_coding-RNA | ||||||||||
| WBPaper00025032:cluster_97 | ||||||||||
| WBPaper00048989:eat-2(ad465)_rapamycin_upregulated | ||||||||||
| Map_info | Map | III | Position | -22.5753 | ||||||
| Positive | Positive_clone | Y119D3B | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
