WormBase Tree Display for Gene: WBGene00022301
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| WBGene00022301 | SMap | S_parent | Sequence | Y76B12C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cpsf-1 | Person_evidence | WBPerson71 | |||||
| Sequence_name | Y76B12C.7 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_Y76B12C.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cpsf-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Jan 2008 15:11:50 | WBPerson2970 | Name_change | CGC_name | cpsf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpsf | ||||||||
| Allele (618) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00094424 | ||||||||
| 00094425 | |||||||||
| 00094426 | |||||||||
| 00094427 | |||||||||
| 00094428 | |||||||||
| 00094429 | |||||||||
| 00094430 | |||||||||
| 00126450 | |||||||||
| 00126451 | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00010890 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00019323 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA polyadenylation. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Human ortholog(s) of this gene implicated in myopia. Is an ortholog of human CPSF1 (cleavage and polyadenylation specific factor 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:11830 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2324) | ||||
| Molecular_info | Corresponding_CDS | Y76B12C.7a | |||||||
| Y76B12C.7b | |||||||||
| Y76B12C.7c | |||||||||
| Y76B12C.7d | |||||||||
| Corresponding_transcript | Y76B12C.7a.1 | ||||||||
| Y76B12C.7b.1 | |||||||||
| Y76B12C.7c.1 | |||||||||
| Y76B12C.7d.1 | |||||||||
| Other_sequence (22) | |||||||||
| Associated_feature | WBsf651661 | ||||||||
| WBsf651662 | |||||||||
| WBsf651663 | |||||||||
| WBsf667756 | |||||||||
| WBsf1016844 | |||||||||
| WBsf1016845 | |||||||||
| WBsf229788 | |||||||||
| Experimental_info | RNAi_result (37) | ||||||||
| Expr_pattern | Expr1016054 | ||||||||
| Expr1039843 | |||||||||
| Expr1161909 | |||||||||
| Expr2010510 | |||||||||
| Expr2028750 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (97) | |||||||||
| Interaction (64) | |||||||||
| Map_info | Map | IV | Position | -12.0268 | Error | 0.146094 | |||
| Positive | Positive_clone | Y76B12C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032289 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042648 | |||||||||
| WBPaper00047180 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058884 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
