WormBase Tree Display for Gene: WBGene00022046
expand all nodes | collapse all nodes | view schema
| WBGene00022046 | SMap | S_parent | Sequence | Y66H1A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | garr-1 | Person_evidence | WBPerson2113 | |||||
| WBPerson47953 | |||||||||
| Sequence_name | Y66H1A.4 | ||||||||
| Molecular_name | Y66H1A.4 | ||||||||
| Y66H1A.4.1 | |||||||||
| CE36757 | |||||||||
| Other_name | CELE_Y66H1A.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | garr-1 | ||||||||
| DB_info | Database | AceView | gene | 4B179 | |||||
| WormQTL | gene | WBGene00022046 | |||||||
| WormFlux | gene | WBGene00022046 | |||||||
| NDB | locus_tag | CELE_Y66H1A.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022046|UniProtKB=Q9TYK1 | |||||||
| family | PTHR23237 | ||||||||
| NCBI | gene | 176870 | |||||||
| RefSeq | protein | NM_067526.4 | |||||||
| SwissProt | UniProtAcc | Q9TYK1 | |||||||
| TREEFAM | TREEFAM_ID | TF350747 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TYK1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 10 Nov 2021 16:42:28 | WBPerson1983 | Name_change | CGC_name | garr-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | garr | ||||||||
| Allele (24) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to enable box H/ACA snoRNA binding activity. Predicted to be involved in snoRNA guided rRNA pseudouridine synthesis. Predicted to be located in nucleolus. Predicted to be part of box H/ACA snoRNP complex. Is an ortholog of human GAR1 (GAR1 ribonucleoprotein). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y66H1A.4 | |||||||
| Corresponding_CDS_history | Y66H1A.4:wp124 | ||||||||
| Corresponding_transcript | Y66H1A.4.1 | ||||||||
| Other_sequence (47) | |||||||||
| Associated_feature | WBsf645756 | ||||||||
| WBsf995142 | |||||||||
| WBsf1016547 | |||||||||
| WBsf227843 | |||||||||
| WBsf227844 | |||||||||
| WBsf227845 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1012830 | ||||||||
| Expr1039695 | |||||||||
| Expr1161386 | |||||||||
| Expr2008190 | |||||||||
| Expr2026430 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (148) | |||||||||
| Interaction (164) | |||||||||
| Map_info | Map | IV | Position | -26.0067 | |||||
| Positive | Positive_clone | Y66H1A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027740 | ||||||||
| WBPaper00031949 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062385 | |||||||||
| WBPaper00062599 | |||||||||
| WBPaper00064663 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
