WormBase Tree Display for Gene: WBGene00022046

WBGene00022046 SMap: S_parent: Sequence: Y66H1A
  Identity: Version: 2
    Name: CGC_name: garr-1 Person_evidence: WBPerson2113
            WBPerson47953
      Sequence_name: Y66H1A.4
      Molecular_name: Y66H1A.4
        Y66H1A.4.1
        CE36757
      Other_name: CELE_Y66H1A.4 Accession_evidence: NDB BX284604
      Public_name: garr-1
    DB_info: Database: AceView gene 4B179
        WormQTL gene WBGene00022046
        WormFlux gene WBGene00022046
        NDB locus_tag CELE_Y66H1A.4
        Panther gene CAEEL|WormBase=WBGene00022046|UniProtKB=Q9TYK1
          family PTHR23237
        NCBI gene 176870
        RefSeq protein NM_067526.4
        SwissProt UniProtAcc Q9TYK1
        TREEFAM TREEFAM_ID TF350747
        UniProt_GCRP UniProtAcc Q9TYK1
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 10 Nov 2021 16:42:28 WBPerson1983 Name_change: CGC_name: garr-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: garr
    Allele (24)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Ortholog: WBGene00034295 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00071878 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00150994 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00124624 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00227249 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10723 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15288 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g20208 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2672 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22238 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6394 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13993 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g20414 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1085 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g17971 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g23954 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-Y66H1A.4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10702 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00024.g1396 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12142 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016150 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02790 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g10445 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40020400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9507 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241720 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00276972 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00260178 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00286593 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000001131 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0011824 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-893 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:14264 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1930948 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1563995 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable box H/ACA snoRNA binding activity. Predicted to be involved in snoRNA guided rRNA pseudouridine synthesis. Predicted to be located in nucleolus. Predicted to be part of box H/ACA snoRNP complex. Is an ortholog of human GAR1 (GAR1 ribonucleoprotein). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y66H1A.4
    Corresponding_CDS_history: Y66H1A.4:wp124
    Corresponding_transcript: Y66H1A.4.1
    Other_sequence (47)
    Associated_feature: WBsf645756
      WBsf995142
      WBsf1016547
      WBsf227843
      WBsf227844
      WBsf227845
  Experimental_info: RNAi_result (13)
    Expr_pattern: Expr1012830
      Expr1039695
      Expr1161386
      Expr2008190
      Expr2026430
    Microarray_results (17)
    Expression_cluster (148)
    Interaction (164)
  Map_info: Map: IV Position: -26.0067
    Positive: Positive_clone: Y66H1A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027740
    WBPaper00031949
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00062385
    WBPaper00062599
    WBPaper00064663
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene