WormBase Tree Display for Gene: WBGene00022007
expand all nodes | collapse all nodes | view schema
WBGene00022007 | SMap | S_parent | Sequence | Y59H11AM | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | mpst-6 | Person_evidence | WBPerson1852 | |||
Sequence_name | Y59H11AM.3 | ||||||
Molecular_name | Y59H11AM.3 | ||||||
Y59H11AM.3.1 | |||||||
CE25519 | |||||||
Other_name | Y59H11AM.b | Curator_confirmed | WBPerson1983 | ||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
CELE_Y59H11AM.3 | Accession_evidence | NDB | BX284604 | ||||
Public_name | mpst-6 | ||||||
DB_info | Database | AceView | gene | 4J328 | |||
WormFlux | gene | WBGene00022007 | |||||
NDB | locus_tag | CELE_Y59H11AM.3 | |||||
NCBI | gene | 177661 | |||||
RefSeq | protein | NM_069060.3 | |||||
TREEFAM | TREEFAM_ID | TF315133 | |||||
TrEMBL | UniProtAcc | G5ECA0 | |||||
UniProt_GCRP | UniProtAcc | G5ECA0 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | mpst | ||||||
Allele | WBVar01500079 | ||||||
WBVar02122464 | |||||||
WBVar01498996 | |||||||
WBVar02121213 | |||||||
WBVar01499396 | |||||||
WBVar02123086 | |||||||
WBVar01499633 | |||||||
WBVar01498928 | |||||||
WBVar02122609 | |||||||
WBVar01500245 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00126185 | ||||||
Ortholog (42) | |||||||
Paralog | WBGene00008409 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | |||||||
WBGene00010380 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00011307 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00017387 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00022006 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00010383 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Automated_description | Predicted to enable sulfurtransferase activity. Is an ortholog of human MPST (mercaptopyruvate sulfurtransferase). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y59H11AM.3 | |||||
Corresponding_transcript | Y59H11AM.3.1 | ||||||
Other_sequence | FD517645.1 | ||||||
CSC00860_2 | |||||||
CR11297 | |||||||
FD517140.1 | |||||||
CR08836 | |||||||
Associated_feature | WBsf997242 | ||||||
WBsf230442 | |||||||
Experimental_info | RNAi_result | WBRNAi00022563 | Inferred_automatically | RNAi_primary | |||
WBRNAi00057781 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00037640 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00057782 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1161213 | ||||||
Drives_construct | WBCnstr00024367 | ||||||
Construct_product | WBCnstr00024367 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (77) | |||||||
Interaction | WBInteraction000120577 | ||||||
WBInteraction000241625 | |||||||
WBInteraction000285159 | |||||||
WBInteraction000297768 | |||||||
WBInteraction000359694 | |||||||
WBInteraction000367166 | |||||||
WBInteraction000399721 | |||||||
WBInteraction000418411 | |||||||
WBInteraction000551773 | |||||||
Map_info | Map | IV | Position | 3.90388 | |||
Positive | Positive_clone | Y59H11AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00040475 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |