WormBase Tree Display for Gene: WBGene00021981
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| WBGene00021981 | SMap | S_parent | Sequence | Y58G8A | |||
|---|---|---|---|---|---|---|---|
| Identity (6) | |||||||
| Gene_info | Biotype | SO:0001217 | |||||
| Gene_class | lgc | ||||||
| Allele (59) | |||||||
| Strain | WBStrain00032199 | ||||||
| RNASeq_FPKM (74) | |||||||
| GO_annotation (17) | |||||||
| Ortholog (32) | |||||||
| Paralog (100) | |||||||
| Structured_description | Concise_description | lgc-26 encodes a ligand-gated ion channel with similarity to the nicotinic acetylcholine receptors; lgc-26 activity is required for endocytosis by coelomocytes; an LGC-26::GFP fusion protein is expressed in coelomocytes and localizes to the cytoplasm. | Paper_evidence | WBPaper00025238 | |||
| Curator_confirmed | WBPerson1843 | ||||||
| Date_last_updated | 01 Sep 2010 00:00:00 | ||||||
| Automated_description | Predicted to enable excitatory extracellular ligand-gated monoatomic ion channel activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Involved in determination of adult lifespan and endocytosis. Located in cytoplasm. | Paper_evidence | WBPaper00065943 | ||||
| Curator_confirmed | WBPerson324 | ||||||
| WBPerson37462 | |||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
| Molecular_info | Corresponding_CDS | Y58G8A.1 | |||||
| Corresponding_transcript | Y58G8A.1.1 | ||||||
| Associated_feature | WBsf646626 | ||||||
| WBsf231312 | |||||||
| Experimental_info | RNAi_result | WBRNAi00082008 | Inferred_automatically | RNAi_primary | |||
| WBRNAi00082010 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057732 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00066346 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00082007 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00082009 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021160 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1016562 | ||||||
| Expr1039666 | |||||||
| Expr1161158 | |||||||
| Expr2013105 | |||||||
| Expr2031337 | |||||||
| Microarray_results (19) | |||||||
| Expression_cluster (112) | |||||||
| Interaction | WBInteraction000051703 | ||||||
| WBInteraction000051704 | |||||||
| Map_info | Map | V | Position | -20.005 | Error | 6.9e-05 | |
| Positive | Positive_clone | Y58G8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||
| Pseudo_map_position | |||||||
| Reference | WBPaper00025238 | ||||||
| WBPaper00035230 | |||||||
| WBPaper00065331 | |||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
| Method | Gene |
