WormBase Tree Display for Gene: WBGene00021902
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WBGene00021902 | SMap | S_parent | Sequence | Y54H5A | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | oxy-4 | Paper_evidence | WBPaper00033040 | |||
Person_evidence | WBPerson264 | ||||||
Sequence_name | Y54H5A.4 | ||||||
Molecular_name | Y54H5A.4 | ||||||
Y54H5A.4.1 | |||||||
CE29883 | |||||||
Other_name | CELE_Y54H5A.4 | Accession_evidence | NDB | BX284603 | |||
Public_name | oxy-4 | ||||||
DB_info | Database | AceView | gene | 3G244 | |||
3G246 | |||||||
WormQTL | gene | WBGene00021902 | |||||
WormFlux | gene | WBGene00021902 | |||||
NDB | locus_tag | CELE_Y54H5A.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00021902|UniProtKB=Q9N392 | |||||
family | PTHR11615 | ||||||
NCBI | gene | 175702 | |||||
RefSeq | protein | NM_065691.8 | |||||
SwissProt | UniProtAcc | Q9N392 | |||||
TREEFAM | TREEFAM_ID | TF106273 | |||||
UniProt_GCRP | UniProtAcc | Q9N392 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | oxy | ||||||
Allele (37) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00093617 | ||||||
00093618 | |||||||
00093619 | |||||||
00093620 | |||||||
00093621 | |||||||
00093622 | |||||||
Contained_in_operon | CEOP3260 | ||||||
Ortholog (43) | |||||||
Paralog | WBGene00021562 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Automated_description | Predicted to enable 4 iron, 4 sulfur cluster binding activity and metal ion binding activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to be part of CIA complex. Is an ortholog of human CIAO3 (cytosolic iron-sulfur assembly component 3). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y54H5A.4 | |||||
Corresponding_CDS_history | Y54H5A.4:wp100 | ||||||
Y54H5A.4:wp104 | |||||||
Corresponding_transcript | Y54H5A.4.1 | ||||||
Other_sequence (30) | |||||||
Associated_feature | WBsf666890 | ||||||
WBsf666891 | |||||||
WBsf226640 | |||||||
Experimental_info | RNAi_result | WBRNAi00033620 | Inferred_automatically | RNAi_primary | |||
WBRNAi00057483 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00057492 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00007085 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00057482 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00078165 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1017419 | ||||||
Expr1039619 | |||||||
Expr1160930 | |||||||
Expr2014671 | |||||||
Expr2032904 | |||||||
Drives_construct | WBCnstr00024407 | ||||||
Construct_product | WBCnstr00024407 | ||||||
Microarray_results (14) | |||||||
Expression_cluster (72) | |||||||
Interaction | WBInteraction000118365 | ||||||
WBInteraction000186156 | |||||||
WBInteraction000195512 | |||||||
WBInteraction000460979 | |||||||
WBInteraction000547735 | |||||||
WBInteraction000576337 | |||||||
WBProcess | WBbiopr:00000001 | ||||||
WBbiopr:00000065 | |||||||
Map_info | Map | III | Position | -2.05115 | Error | 0.001553 | |
Positive | Positive_clone | Y54H5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00033040 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |