WormBase Tree Display for Gene: WBGene00021784
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| WBGene00021784 | SMap | S_parent | Sequence | Y51H7C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | cogc-4 | Paper_evidence | WBPaper00026979 | |||||
| Person_evidence | WBPerson449 | ||||||||
| Sequence_name | Y51H7C.6 | ||||||||
| Molecular_name | Y51H7C.6a | ||||||||
| Y51H7C.6a.1 | |||||||||
| CE26151 | |||||||||
| Y51H7C.6b | |||||||||
| CE26152 | |||||||||
| Y51H7C.6c | |||||||||
| CE39055 | |||||||||
| Y51H7C.6b.1 | |||||||||
| Y51H7C.6c.1 | |||||||||
| Other_name | Y51H7C.k | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y51H7C.o | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y51H7C.6 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | cogc-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 16 Jan 2006 17:07:41 | WBPerson2970 | Name_change | CGC_name | cogc-4 | ||||
| 3 | 06 Mar 2018 14:49:17 | WBPerson4025 | Event | Split_into | WBGene00302984 | ||||
| Split_into | WBGene00302984 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cogc | ||||||||
| Allele (106) | |||||||||
| Possibly_affected_by | WBVar02153274 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089442 | ||||||||
| 00089443 | |||||||||
| 00089444 | |||||||||
| 00089445 | |||||||||
| 00089446 | |||||||||
| 00089447 | |||||||||
| 00089448 | |||||||||
| 00089449 | |||||||||
| 00089450 | |||||||||
| 00089451 | |||||||||
| Contained_in_operon | CEOP2048 | ||||||||
| CEOP5602 | |||||||||
| Ortholog (41) | |||||||||
| Structured_description | Concise_description | cogc-4 encodes an ortholog of mammalian COG-4, a subunit of lobe A ofthe conserved oligomeric Golgi complex (COGC); COGC-4 is required fornormal gonadal distal tip cell migration, a process that also requiresseven other orthologs of COGC subunits; like other lobe A subunits inboth C. elegans and S. cerevisiae, COGC-4 is strongly required fornormal function, while lobe B subunits are only partially required ineither worms or yeast. | Paper_evidence | WBPaper00026979 | |||||
| WBPaper00028363 | |||||||||
| WBPaper00028599 | |||||||||
| WBPaper00028603 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 25 Oct 2006 00:00:00 | ||||||||
| Automated_description | Involved in gonad morphogenesis and regulation of cell migration. Predicted to be located in Golgi membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in Saul-Wilson syndrome and congenital disorder of glycosylation type IIj. Is an ortholog of human COG4 (component of oligomeric golgi complex 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070262 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18620) | ||||
| DOID:0111673 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18620) | ||||||
| Molecular_info | Corresponding_CDS | Y51H7C.6a | |||||||
| Y51H7C.6b | |||||||||
| Y51H7C.6c | |||||||||
| Corresponding_CDS_history | Y51H7C.6d:wp264 | ||||||||
| Corresponding_transcript | Y51H7C.6a.1 | ||||||||
| Y51H7C.6b.1 | |||||||||
| Y51H7C.6c.1 | |||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf643960 | ||||||||
| WBsf657339 | |||||||||
| WBsf657340 | |||||||||
| WBsf986677 | |||||||||
| WBsf986678 | |||||||||
| WBsf1011545 | |||||||||
| WBsf1011546 | |||||||||
| WBsf220841 | |||||||||
| WBsf220842 | |||||||||
| WBsf220843 | |||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr1019942 | ||||||||
| Expr1039553 | |||||||||
| Expr1160649 | |||||||||
| Expr2010293 | |||||||||
| Expr2028535 | |||||||||
| Microarray_results (45) | |||||||||
| Expression_cluster (83) | |||||||||
| SAGE_tag | SAGE:ttctttgaag | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:ctcgtcgtcg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aacccgacgagggatta | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aacaaagtgtcagcgta | Strand | Antisense | |||||||
| SAGE:aagaattcgacacccga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aagaattcga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (30) | |||||||||
| Map_info | Map | II | Position | -15.456 | Error | 0.003345 | |||
| Positive | Positive_clone | Y51H7C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061076 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
