WormBase Tree Display for Gene: WBGene00021580
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| WBGene00021580 | SMap | S_parent | Sequence | Y46C8AL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-174 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | Y46C8AL.2 | ||||||||
| Molecular_name | Y46C8AL.2 | ||||||||
| Y46C8AL.2.1 | |||||||||
| CE40157 | |||||||||
| Other_name | Y46C8AL.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y46C8AL.f | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y46C8AL.g | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y46C8AL.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | clec-174 | ||||||||
| DB_info | Database | AceView | gene | 4E700 | |||||
| WormQTL | gene | WBGene00021580 | |||||||
| WormFlux | gene | WBGene00021580 | |||||||
| NDB | locus_tag | CELE_Y46C8AL.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021580|UniProtKB=Q9N3W8 | |||||||
| family | PTHR23062 | ||||||||
| NCBI | gene | 189943 | |||||||
| RefSeq | protein | NM_068040.4 | |||||||
| TREEFAM | TREEFAM_ID | TF317818 | |||||||
| TrEMBL | UniProtAcc | Q9N3W8 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N3W8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-174 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele | WBVar02070975 | ||||||||
| WBVar00270493 | |||||||||
| WBVar02121196 | |||||||||
| WBVar02121197 | |||||||||
| WBVar02121199 | |||||||||
| WBVar02121200 | |||||||||
| WBVar02003808 | |||||||||
| WBVar02003809 | |||||||||
| WBVar02003810 | |||||||||
| WBVar02003811 | |||||||||
| WBVar00901736 | |||||||||
| WBVar02124895 | |||||||||
| WBVar00901737 | |||||||||
| WBVar00901738 | |||||||||
| WBVar00901739 | |||||||||
| WBVar00901740 | |||||||||
| WBVar02123243 | |||||||||
| WBVar00901741 | |||||||||
| WBVar00901742 | |||||||||
| WBVar00901743 | |||||||||
| WBVar01499790 | |||||||||
| WBVar02121615 | |||||||||
| WBVar00188034 | |||||||||
| WBVar01898938 | |||||||||
| WBVar00188035 | |||||||||
| WBVar00188036 | |||||||||
| WBVar00188037 | |||||||||
| WBVar00188038 | |||||||||
| WBVar00188039 | |||||||||
| WBVar00188040 | |||||||||
| WBVar00188041 | |||||||||
| WBVar02121993 | |||||||||
| WBVar02121994 | |||||||||
| WBVar02089978 | |||||||||
| WBVar01499633 | |||||||||
| WBVar02124584 | |||||||||
| WBVar02124585 | |||||||||
| WBVar02124586 | |||||||||
| WBVar02152283 | |||||||||
| WBVar02122952 | |||||||||
| WBVar02122589 | |||||||||
| WBVar02152311 | |||||||||
| WBVar02097937 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00094060 | ||||||||
| Ortholog (21) | |||||||||
| Paralog (44) | |||||||||
| Structured_description | Automated_description | Involved in defense response to Gram-negative bacterium. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46C8AL.2 | |||||||
| Corresponding_CDS_history | Y46C8AL.2:wp154 | ||||||||
| Y46C8AL.2:wp156 | |||||||||
| Corresponding_transcript | Y46C8AL.2.1 | ||||||||
| Other_sequence | Tcir_isotig09580 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00092238 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020641 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027586 | ||||||||
| Expr1160117 | |||||||||
| Drives_construct | WBCnstr00024497 | ||||||||
| Construct_product | WBCnstr00024497 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (256) | |||||||||
| Interaction | WBInteraction000544080 | ||||||||
| WBInteraction000571164 | |||||||||
| Map_info | Map | IV | Position | -1.501 | Error | 0.01326 | |||
| Positive | Positive_clone | Y46C8AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031686 | ||||||||
| WBPaper00039120 | |||||||||
| WBPaper00055435 | |||||||||
| WBPaper00065681 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
